Browse Element(s) Details


Os.2697.1.S1_a_at

Description gb:AY522925.1
DB_XREF= gi:41398197
GEN=FBA
TID=Os.2697.1
CNT=73
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2697 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) fructose 1,6-bisphosphate aldolase (FBA) mRNA, complete cds.
PROD=fructose 1,6-bisphosphate aldolase
FL= gb:AY522925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3338011/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2697.1.S1_a_at--892--911Chr05:19525209..19525233 (25 bp)
AGGCTCTGACGCCAAGAAGGTGTCT
LOC_Os05g33380
Os.2697.1.S1_a_at--561--2731Chr05:19525222..19525246 (25 bp)
AAGAAGGTGTCTCCCGAGGTCATCG
LOC_Os05g33380
Os.2697.1.S1_a_at--262--9511Chr05:19525231..19525255 (25 bp)
TCTCCCGAGGTCATCGCTGAGTACA
LOC_Os05g33380
Os.2697.1.S1_a_at--16--2731Chr05:19525585..19525609 (25 bp)
AAGTACTGATTTGCCTTGGGAGGTG
LOC_Os05g33380
Os.2697.1.S1_a_at--383--6151Chr05:19525604..19525628 (25 bp)
GAGGTGCTGGCTACCATTGGAACAT
LOC_Os05g33380
Os.2697.1.S1_a_at--319--31Chr05:19525619..19525643 (25 bp)
ATTGGAACATTCTGCGGCTGTTGCT
LOC_Os05g33380
Os.2697.1.S1_a_at--1145--4691Chr05:19525632..19525656 (25 bp)
GCGGCTGTTGCTTAATGTGGTTTTG
LOC_Os05g33380
Os.2697.1.S1_a_at--589--9531Chr05:19525660..19525684 (25 bp)
TCTAGAGGGCAATCTATGGTTATCT
LOC_Os05g33380
Os.2697.1.S1_a_at--107--831Chr05:19525675..19525699 (25 bp)
ATGGTTATCTAAAATGTCTTGTCGT
LOC_Os05g33380
Os.2697.1.S1_a_at--1161--5531Chr05:19525690..19525714 (25 bp)
GTCTTGTCGTAATAATTCTGGAACC
LOC_Os05g33380
Os.2697.1.S1_a_at--665--10591Chr05:19525705..19525729 (25 bp)
TTCTGGAACCTTTTTGTGTAACACA
LOC_Os05g33380
Target Sequence 
AGGCTCTGACGCCAAGAAGGTGTCTCCCGAGGTCATCGCTGAGTACACCGTCCGCACCCTCCAGAGGACCGTCCCCGCTG
CCGTGCCCGCCATCGTCTTCCTGTCCGGTGGGCAGAGCGAGGAGGAGGCGACCCTGAACCTCAACGCCATGAACAAGCTC
AGCACCAAGAAGCCGTGGTCGCTGTCCTTCTCCTTCGGCCGTGCCCTCCAGCAGAGCACGCTCAAGGCCTGGTCCGGCAA
GGCGGAGAACATTGAGAAGGCCAGGGCGGCCTTCCTTACCAGGTGCAAGGCCAACTCCGAGGCTACCCTCGGTACATACA
AGGGTGACGCTGTCCTCGGCGAGGGCGCCTCCGAGAGCCTTCACGTCAAGGACTACAAGTACTGATTTGCCTTGGGAGGT
GCTGGCTACCATTGGAACATTCTGCGGCTGTTGCTTAATGTGGTTTTGATATCTAGAGGGCAATCTATGGTTATCTAAAA
TGTCTTGTCGTAATAATTCTGGAACCTTTTTGTGTAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2697.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis