Browse Element(s) Details


Os.27019.1.S1_at

Description gb:AK058333.1
DB_XREF= gi:32968351
TID=Os.27019.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C11, full insert sequence.
FL= gb:AK058333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4341011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43390Os.35154.1.S1_x_at6/114+25439253..25447635Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43400Os.53217.1.S1_x_at3/114+25453356..25457514transposon protein, putative, unclassified, expressed
LOC_Os04g43400Os.38172.1.S1_x_at2/114+25453356..25457514transposon protein, putative, unclassified, expressed
LOC_Os04g43400Os.43567.1.S1_x_at2/114+25453356..25457514transposon protein, putative, unclassified, expressed
LOC_Os04g43410Os.27019.1.S1_at11/114+25462227..25466604Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27019.1.S1_at--28--31Chr04:25465941..25466120 (25 bp)
ATTGGAACTCCAACAGCGATGCCCA
LOC_Os04g43410
Os.27019.1.S1_at--455--1631Chr04:25465927..25465951 (25 bp)
AGCGATGCCCACTTTCTACGTGGTA
LOC_Os04g43410
Os.27019.1.S1_at--135--2471Chr04:25465857..25465881 (25 bp)
AACAACCTGCCAATGTTCATCACAG
LOC_Os04g43410
Os.27019.1.S1_at--753--6491Chr04:25465691..25465715 (25 bp)
GATAGTTACACCGACGCAGAGGATT
LOC_Os04g43410
Os.27019.1.S1_at--224--5751Chr04:25462618..25462642 (25 bp)
GACGGAGCTGATGTTCGTGGCTACT
LOC_Os04g43410
Os.27019.1.S1_at--684--8571Chr04:25462588..25462612 (25 bp)
TGGTCCGTCGTTGACAATTTCGAGT
LOC_Os04g43410
Os.27019.1.S1_at--240--8572Chr01:26906112..26906339 (25 bp)
TGGTTGTTTGGGTACACCCTTCGAT
NONE
Os.27019.1.S1_at--111--2171Chr04:25462551..25462575 (25 bp)
ACACCCTTCGATTTGGACTGTACTA
LOC_Os04g43410
Os.27019.1.S1_at--223--2811Chr04:25462505..25462529 (25 bp)
AAGATCTCCAAAGCTATCTGCGCTG
LOC_Os04g43410
Os.27019.1.S1_at--163--3831Chr04:25462488..25462512 (25 bp)
CTGCGCTGTGGTACAAGGAATTCCT
LOC_Os04g43410
Os.27019.1.S1_at--1041--931Chr04:25462473..25462497 (25 bp)
AGGAATTCCTCCAAAATCTGCATGA
LOC_Os04g43410
Target Sequence 
ATTGGAACTCCAACAGCGATGCCCACTTTCTACGTGGTACCGGACGGGATTGAGAAGATGGTCAAGTACTTCATGAGAAG
ATACAACAACCTGCCAATGTTCATCACAGAAAACGGATACGCGCAAGGTGGAGATAGTTACACCGACGCAGAGGATTGGA
TTGATGACGAGGATAGGATAGAGTACCTGGAAGGCTATCTCACAAAACTTGCCAAAGTTATCAGGGACGGAGCTGATGTT
CGTGGCTACTTCGCCTGGTCCGTCGTTGACAATTTCGAGTGGTTGTTTGGGTACACCCTTCGATTTGGACTGTACTACAT
AGACTACAGAACACAGGAAAGATCTCCAAAGCTATCTGCGCTGTGGTACAAGGAATTCCTCCAAAATCTGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis