Browse Element(s) Details


OsAffx.26443.1.S1_s_at

Description tigr:9632.m04164
TID=OsAffx.26443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4344011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43410Os.27019.1.S1_at11/114+25462227..25466604Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26443.1.S1_s_at--221--5191Chr04:25489675..25489699 (25 bp)
GCAATGGCTGAGAGTTCACGCAATG
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--695--5391Chr04:25489539..25489563 (25 bp)
GAAGCATTTGCACGCCAAGAGATTT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--298--2791Chr04:25489523..25489547 (25 bp)
AAGAGATTTTCCCTGCCTTGAGACT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--469--8191Chr04:25489490..25489514 (25 bp)
GGAAGACTGCCCAAATTTGAGACGC
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--356--3891Chr04:25489459..25489483 (25 bp)
CTGTGCAGCACTCACAACTGTGGTA
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--369--6011Chr04:25489357..25489381 (25 bp)
GAGAGCAAGTACTTCATTCCAATCT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--434--71Chr04:25489342..25489366 (25 bp)
ATTCCAATCTGACAGGATCCCGTTT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--282--6351Chr04:25489327..25489351 (25 bp)
GATCCCGTTTTCAGTGGTCAATTAT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--791--7031Chr04:25489302..25489326 (25 bp)
GTACACTATCGACATTTACCATCAT
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--582--9971Chr04:25489286..25489310 (25 bp)
TACCATCATTTTTTCAGGACCAACG
LOC_Os04g43440
OsAffx.26443.1.S1_s_at--471--7991Chr04:25489270..25489294 (25 bp)
GGACCAACGTTACATTCATTTTTCA
LOC_Os04g43440
Target Sequence 
GCAATGGCTGAGAGTTCACGCAATGAGTGGAATGATGATTACCAAAGCGTCAATGGAGAATCAACCAATGGCGCAACGAG
GCAACCTGACTTCCCAAAGTTGAGATCAATTGTGCTGACTGATGTGAAGAAGCTGAGAAGCATTTGCACGCCAAGAGATT
TTCCCTGCCTTGAGACTCTTCGAGTGGAAGACTGCCCAAATTTGAGACGCATCCCACTGTGCAGCACTCACAACTGTGGT
AAACTGAAGCAAATTTGTGGTTCATCTGATTGGTGGAAGAAACTGCTGTGGGAGGACAAGGAGGCGGTGGCACATATGGA
GAGCAAGTACTTCATTCCAATCTGACAGGATCCCGTTTTCAGTGGTCAATTATGTACACTATCGACATTTACCATCATTT
TTTCAGGACCAACGTTACATTCATTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26443.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis