Browse Element(s) Details


OsAffx.4075.1.S1_at

Description tigr:9632.m04165
TID=OsAffx.4075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4075.1.S1_at--796--951Chr04:25495028..25495052 (25 bp)
AGGACCAGATTTTCTTCTCCGACGA
LOC_Os04g43450
OsAffx.4075.1.S1_at--42--8891Chr04:25495003..25495027 (25 bp)
TGAGAGTAACACGTCGGTCGTCCTC
LOC_Os04g43450
OsAffx.4075.1.S1_at--349--4691Chr04:25494974..25494998 (25 bp)
GCGGCGGAACTTTCCAGGTGGTCAA
LOC_Os04g43450
OsAffx.4075.1.S1_at--487--1871Chr04:25494947..25494971 (25 bp)
ACGAGGGAATCAACTGCTACCGGCC
LOC_Os04g43450
OsAffx.4075.1.S1_at--163--3031Chr04:25494842..25494866 (25 bp)
AATGCGTCACGGTGCAGCGTCTCTT
LOC_Os04g43450
OsAffx.4075.1.S1_at--373--3731Chr04:25494715..25494739 (25 bp)
CTACTGGTCAAGAATGCCGTCGCAT
LOC_Os04g43450
OsAffx.4075.1.S1_at--1054--4991Chr04:25494694..25494718 (25 bp)
GCATGTCCCCAACATACGTGTCATA
LOC_Os04g43450
OsAffx.4075.1.S1_at--831--7071Chr04:25494642..25494666 (25 bp)
GTAATTGTCTACGACCAGAGCTGGT
LOC_Os04g43450
OsAffx.4075.1.S1_at--903--1631Chr04:25494567..25494591 (25 bp)
AGCGAGGCAGTAAGCTTCCTTCGCA
LOC_Os04g43450
OsAffx.4075.1.S1_at--915--1671Chr04:25494543..25494567 (25 bp)
AGCCGATTCCGTAGCGTGCTGGATG
LOC_Os04g43450
OsAffx.4075.1.S1_at--941--8531Chr04:25494510..25494534 (25 bp)
TGGAGCGGAGTACCACACTGCCATA
LOC_Os04g43450
Target Sequence 
AGGACCAGATTTTCTTCTCCGACGATGAGAGTAACACGTCGGTCGTCCTCGGCGGCGGCGGAACTTTCCAGGTGGTCAAC
CACGAGGGAATCAACTGCTACCGGCCGCTGCGGCTGCTGCAATCCTACGACCTGCGCACGGACTGCTTCCGCAGGTACCG
ACAGCTCCGTCCCACGGGGCAATGGCAATGCGTCACGGTGCAGCGTCTCTTGCACAGGGATGCCTTGCCACCGCCGCCGG
CGACAGATCAGTGGGGGGCAATGCTTCTTCTGTGGGAGGTGATGAGCAGCCTCGGGGCAAGCCGGCCGCCGTGCTACTGG
TCAAGAATGCCGTCGCATGTCCCCAACATACGTGTCATACCTGGAAATGTAATTATGTCTGTAACTGTAATTGTCTACGA
CCAGAGCTGGTGCTTCACCCAGAGCGGGAGGTCAGTGCAAGAGGCGAAGCAGCTGGCAGCAAGCGAGGCAGTAAGCTTCC
TTCGCAGCCGATTCCGTAGCGTGCTGGATGACAGCCCATGGAGCGGAGTACCACACTGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis