Browse Element(s) Details


Os.27024.1.S1_at

Description gb:AK071312.1
DB_XREF= gi:32981335
TID=Os.27024.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086M18, full insert sequence.
FL= gb:AK068740.1 gb:AK071312.1 gb:AK099937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1736011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17340OsAffx.2651.2.S1_s_at11/112+9961171..9963169hypothetical protein
LOC_Os02g17350Os.27334.1.S1_at11/112+9972702..9978097VHS domain containing protein, expressed
LOC_Os02g17360Os.27024.1.S1_at11/112+9981496..9985904pentatricopeptide, putative, expressed
LOC_Os02g17370Os.9047.1.S1_at11/112+9988862..9990641expressed protein
LOC_Os02g17380Os.16591.1.S1_at11/112+9994013..9998242expressed protein
LOC_Os02g17390Os.9729.1.S1_a_at10/112+10001474..10010226Peroxisomal fatty acid beta-oxidation multifunctional protein, putative, expressed
LOC_Os02g17400OsAffx.2652.1.S1_at11/112+10010586..10013468Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27024.1.S1_at--664--6631Chr02:9982638..9982662 (25 bp)
GTTGTGTTACACTTCAAATGCCTCC
LOC_Os02g17360
Os.27024.1.S1_at--359--9271Chr02:9982616..9982640 (25 bp)
TCCTCCTTGCTCAGTTGTAATTCAG
LOC_Os02g17360
Os.27024.1.S1_at--989--4951Chr02:9982296..9982320 (25 bp)
GCATATCCCTGTTGTCTCTGAGGAA
LOC_Os02g17360
Os.27024.1.S1_at--1158--5811Chr02:9982256..9982280 (25 bp)
GACCGGACCTGGTTATGTGTCACGC
LOC_Os02g17360
Os.27024.1.S1_at--1110--2811Chr02:9982133..9982157 (25 bp)
AAGTTGACCATTCTTTTCTGCTCAG
LOC_Os02g17360
Os.27024.1.S1_at--147--1431Chr02:9981841..9981865 (25 bp)
AGAACTGACCGTACCTTGTCAAGGT
LOC_Os02g17360
Os.27024.1.S1_at--52--7091Chr02:9981824..9981848 (25 bp)
GTCAAGGTGCCGTTACATACCAACA
LOC_Os02g17360
Os.27024.1.S1_at--571--4931Chr02:9981789..9981813 (25 bp)
GCTTGGAGTTCCTTCTTCTGTTAAA
LOC_Os02g17360
Os.27024.1.S1_at--545--2251Chr02:9981711..9981735 (25 bp)
AAATAGGCCTGACTGCTCAACATTC
LOC_Os02g17360
Os.27024.1.S1_at--147--10671Chr02:9981649..9981673 (25 bp)
TTCCGGTCCTTTGCGTTATATCCAA
LOC_Os02g17360
Os.27024.1.S1_at--168--10371Chr02:9981557..9981581 (25 bp)
TTTTTTACACTCTACCCTGAACAAG
LOC_Os02g17360
Target Sequence 
GTTGTGTTACACTTCAAATGCCTCCTCCTTGCTCAGTTGTAATTCAGGAATCTGAGAATGGTCAGTGGCATATCCCTGTT
GTCTCTGAGGAAGGTTCACTAGAGAAGGACCGGACCTGGTTATGTGTCACGCGGCGCAACTGAGAGCCAGATTACAATGA
AGCTCAAGTTGATCTAGAAACACAATGTGAATAAATCACTACAACATGGTTTGACATTACTGTAGGGACAAAGTTGACCA
TTCTTTTCTGCTCAGGATCAAGAACTGACCGTACCTTGTCAAGGTGCCGTTACATACCAACAATTCTTTCATGCTTGGAG
TTCCTTCTTCTGTTAAACTGGCCTGTTTCAGGTGTTCAGTAGCCAGAATAGGTGAATAACACGTGCAGAAAAATAGGCCT
GACTGCTCAACATTCAGCTACTATATATGGCTATACAAATATGCATTTGGTCTTCCGGTCCTTTGCGTTATATCCAATTT
AATCATTCAATAAGGCATTGTGTGTACTGTTATGTGCATGAAGTTAGAACTCTGAACTTGTACCTTTTTTACACTCTACC
CTGAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis