Browse Element(s) Details


Os.27028.1.A1_at

Description gb:CB634259
DB_XREF= gi:29629248
DB_XREF=OSIIEb13K15.r
CLONE=OSIIEb13K15
TID=Os.27028.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27028 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45811 (A.thaliana) T45811 Ca2+-transporting ATPase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g415802/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41570NANA5+24259340..24259720hypothetical protein
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27028.1.A1_at--1106--2611Chr05:24270764..24270788 (25 bp)
AACCCCATGGTTATGAGTTGATTCC
LOC_Os05g41580
Os.27028.1.A1_at--954--10651Chr05:24270785..24270809 (25 bp)
TTCCTGAAGGCCCAGAGATTCTATA
LOC_Os05g41580
Os.27028.1.A1_at--404--6051Chr05:24270799..24270823 (25 bp)
GAGATTCTATAGCAGTTTCACGGGA
NONE
Os.27028.1.A1_at--275--8131Chr05:24270829..24270853 (25 bp)
GGAAATTCCGCTCAAACTGCGGTTT
NONE
Os.27028.1.A1_at--1107--7971Chr05:24270889..24270913 (25 bp)
GGATGCACTGTAAGGATTTCTCTAC
NONE
Os.27028.1.A1_at--587--5231Chr05:24271013..24271037 (25 bp)
GAATAGGACCAATCATGCTGCAAGA
NONE
Os.27028.1.A1_at--577--2971Chr05:24271115..24271139 (25 bp)
AATGTGGACTGCTTGGAGGCTTCGT
NONE
Os.27028.1.A1_at--238--6211Chr05:24271130..24271154 (25 bp)
GAGGCTTCGTTGCAAAGCGTACAGT
NONE
Os.27028.1.A1_at--962--6851Chr05:24271153..24271177 (25 bp)
GTTTGAGCTGGTTCTGCAGAGTTCA
NONE
Os.27028.1.A1_at--592--5471Chr05:24271211..24271235 (25 bp)
GAACTCTAGGTACTAACAACTGTCG
NONE
Os.27028.1.A1_at--716--9411Chr05:24271259..24271283 (25 bp)
TCGTGCTTTTCTCTTCAGCGGTGAA
NONE
Target Sequence 
AACCCCATGGTTATGAGTTGATTCCTGAAGGCCCAGAGATTCTATAGCAGTTTCACGGGAGGTGCGGAAATTCCGCTCAA
ACTGCGGTTTNTGCGGTCAGCAACCCAATCAATCATAATGGAAAAGGATGCACTGTAAGGATTTCTCTACTGATGTAATT
TTGTTGAATATGATCATGTGTTTCTGAACATGATATACTGAAGAGTTGAAGTAGATGTTATAACCAGCAGATATGTGATG
AAGTATACGGAATAGGACCAATCATGCTGCAAGATCAGACAGCNTACGGGATTTATGGTGTTGATTCAAGATTTCAAGTA
GATATGGCTGCTACATGAGAATGTCGCAGCAAATGTGGACTGCTTGGAGGCTTCGTTGCAAAGCGTACAGTTTGAGCTGG
TTCTGCAGAGTTCAGCTTGAGATTTGAGCGTACAGTTTTGTAAAATTGAACTCTAGGTACTAACAACTGTCGAAATGGTA
TCATATTATTNCCCTTCGTGCTTTTCTCTTCAGCGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27028.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis