Browse Element(s) Details


Os.27042.1.S1_a_at

Description gb:AK072615.1
DB_XREF= gi:32982638
TID=Os.27042.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative maize transposon MuDR mudrA-like protein (OSJNBa0071K19.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full insert sequence.
FL= gb:AK072615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0155011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01580NANA10+370435..371193hypothetical protein
LOC_Os10g01590NANA10+374930..376357hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27042.1.S1_a_at--993--5951Chr10:346094..346118 (25 bp)
GAGCAATATTCCCAATTCCTGACAT
LOC_Os10g01550
Os.27042.1.S1_a_at--80--9311Chr10:346085..346109 (25 bp)
TCCCAATTCCTGACATGGATACCGT
LOC_Os10g01550
Os.27042.1.S1_a_at--457--831Chr10:346071..346095 (25 bp)
ATGGATACCGTTGATTTTAGTGCTG
LOC_Os10g01550
Os.27042.1.S1_a_at--95--7611Chr10:346046..346070 (25 bp)
GGGCAAATTTGATTCCACCTCCTAA
LOC_Os10g01550
Os.27042.1.S1_a_at--1054--1751Chr10:346030..346054 (25 bp)
ACCTCCTAAGCCACGGACATCAGAT
LOC_Os10g01550
Os.27042.1.S1_a_at--456--8131Chr10:346016..346040 (25 bp)
GGACATCAGATAAACCCAGAAGGAA
LOC_Os10g01550
Os.27042.1.S1_a_at--1062--10331Chr10:345987..346011 (25 bp)
TTTAACCCCAACAAGATACCTACTG
LOC_Os10g01550
Os.27042.1.S1_a_at--1038--291Chr10:345972..345996 (25 bp)
ATACCTACTGTTGTACGGCTCTGTA
LOC_Os10g01550
Os.27042.1.S1_a_at--205--9931Chr10:345959..345983 (25 bp)
TACGGCTCTGTAGCAGGTGCAAGCA
LOC_Os10g01550
Os.27042.1.S1_a_at--938--5011Chr10:345947..345971 (25 bp)
GCAGGTGCAAGCAAGCAGGACACAA
LOC_Os10g01550
Os.27042.1.S1_a_at--780--331Chr10:345923..345947 (25 bp)
ATAAGGCAACCTGTGAAGCGATTTT
LOC_Os10g01550
Target Sequence 
GAGCAATATTCCCAATTCCTGACATGGATACCGTTGATTTTAGTGCTGGGGCAAATTTGATTCCACCTCCTAAGCCACGG
ACATCAGATAAACCCAGAAGGAAGCGTTTTAACCCCAACAAGATACCTACTGTTGTACGGCTCTGTAGCAGGTGCAAGCA
AGCAGGACACAATAAGGCAACCTGTGAAGCGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27042.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis