Browse Element(s) Details


Os.27048.1.S1_at

Description gb:AK100513.1
DB_XREF= gi:32985722
TID=Os.27048.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence.
FL= gb:AK100513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2174011/11Valyl-tRNA synthetase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21730Os.50062.1.S1_at11/113+12390108..12393951leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein
LOC_Os03g21759NANA3+12415573..12416581hypothetical protein
LOC_Os03g21770OsAffx.3290.1.S1_at11/113+12419496..12421543Protein kinase domain containing protein
LOC_Os03g21780Os.53789.1.S1_at11/113+12423756..12426046expressed protein
LOC_Os03g21780OsAffx.26997.1.S1_x_at1/113+12423756..12426046expressed protein
LOC_Os03g21790Os.13756.1.S1_s_at11/113+12426071..12428431Cupin family protein, expressed
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27048.1.S1_at--10--1431Chr03:12402175..12402195 (21 bp)
AGAAAGACGTCCTGCTTTTGCACTC
LOC_Os03g21740
Os.27048.1.S1_at--230--2651Chr03:12402145..12402169 (25 bp)
AAGCCAAGATGTCACTGCCACTATT
LOC_Os03g21740
Os.27048.1.S1_at--552--1991Chr03:12402132..12402156 (25 bp)
ACTGCCACTATTCAATGCCATCAAT
LOC_Os03g21740
Os.27048.1.S1_at--913--451Chr03:12402109..12402133 (25 bp)
ATCTCTAATTGTGTGTCTTTCTTCC
LOC_Os03g21740
Os.27048.1.S1_at--412--7151Chr03:12402095..12402119 (25 bp)
GTCTTTCTTCCGTATCATTTCTTAA
LOC_Os03g21740
Os.27048.1.S1_at--1103--5531Chr03:12401788..12401812 (25 bp)
GAAACTCCAGCTGATTGTGCAATCG
LOC_Os03g21740
Os.27048.1.S1_at--1009--10251Chr03:12401747..12401771 (25 bp)
TTTGTCGGTGTACCTTAAGCTTCAA
LOC_Os03g21740
Os.27048.1.S1_at--39--2351Chr03:12401560..12401581 (22 bp)
AAAGCTACACCATGCTGTGACACAC
LOC_Os03g21740
Os.27048.1.S1_at--860--831Chr03:12401532..12401556 (25 bp)
ATGGATGCTTCTGGTTATCGCGAGA
LOC_Os03g21740
Os.27048.1.S1_at--923--5291Chr03:12401509..12401533 (25 bp)
GAAGGCACCTCAAAGTGTCCAGGAA
LOC_Os03g21740
Os.27048.1.S1_at--504--2731Chr03:12401472..12401496 (25 bp)
AAGCACACTGCTTTGTTGCGGGAAC
LOC_Os03g21740
Target Sequence 
AGAAAGACGTCCTGCTTTTGCACTCTGCCGAAGCCAAGATGTCACTGCCACTATTCAATGCCATCAATCTCTAATTGTGT
GTCTTTCTTCCGTATCATTTCTTAAGATCCTGACAGAGAATGACGAAACTCCAGCTGATTGTGCAATCGCTGTTGTTAAC
AAAGATTTGTCGGTGTACCTTAAGCTTCAAGGAGCCATAAATGCAGAGGCTGAGCGTGAAAAGCTAAGGAAGAAGAGAGA
TGGAATCCAAAAGCTACACCATGCTGTGACACACATGATGGATGCTTCTGGTTATCGCGAGAAGGCACCTCAAAGTGTCC
AGGAAGGGGATATGAGAAAGCACACTGCTTTGTTGCGGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis