Browse Element(s) Details


Os.27049.1.S1_at

Description gb:AK106048.1
DB_XREF= gi:32991257
TID=Os.27049.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E10, full insert sequence.
FL= gb:AK106048.1 gb:AK066590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1920011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein
LOC_Os02g19180OsAffx.2680.1.S1_at10/112+11182943..11184386Zinc finger, C2H2 type family protein
LOC_Os02g19200Os.27049.1.S2_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19200Os.27049.1.S1_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27049.1.S1_at--1151--7251Chr02:11192942..11192966 (25 bp)
GTCCATGAGCTTGTTCTTCATCGAG
LOC_Os02g19200
Os.27049.1.S1_at--478--6031Chr02:11192901..11192925 (25 bp)
GAGATGACTGCCCTGAAAGCTTTCA
LOC_Os02g19200
Os.27049.1.S1_at--581--5591Chr02:11192849..11192873 (25 bp)
GAAATCTGGGCTTTATCTGATCCAT
LOC_Os02g19200
Os.27049.1.S1_at--193--2811Chr02:11192812..11192836 (25 bp)
AAGATCCATGTTTGGCTTCACGGAA
LOC_Os02g19200
Os.27049.1.S1_at--324--2491Chr02:11192779..11192803 (25 bp)
AACAGCTCTGCCGATTGGAATCTAG
LOC_Os02g19200
Os.27049.1.S1_at--804--3091Chr02:11192752..11192776 (25 bp)
AATACTATTTGTTTGCGCGAGGTGT
LOC_Os02g19200
Os.27049.1.S1_at--158--4631Chr02:11192736..11192760 (25 bp)
GCGAGGTGTTTGGTCATCTTGTGAA
LOC_Os02g19200
Os.27049.1.S1_at--232--6571Chr02:11192692..11192716 (25 bp)
GATTCACGCATTAGTCTGCCTGGGT
LOC_Os02g19200
Os.27049.1.S1_at--482--311Chr02:11192543..11192567 (25 bp)
ATACCCCTTCATGATGGTTTGGCCA
LOC_Os02g19200
Os.27049.1.S1_at--350--2911Chr02:11192470..11192494 (25 bp)
AAGGTTTCCCTCGAGATGATTTGCA
LOC_Os02g19200
Os.27049.1.S1_at--347--10131Chr02:11192429..11192453 (25 bp)
TATGATGATTCTGCTACTTCTGTAG
LOC_Os02g19200
Target Sequence 
GTCCATGAGCTTGTTCTTCATCGAGGTCCCCGATGCCGTGCGAGATGACTGCCCTGAAAGCTTTCAGCTGAGCGNTAAGC
TGTCGCAAGCGGAGAAATCTGGGCTTTATCTGATCCATGTGGAGGGGTTTAAGATCCATGTTTGGCTTCACGGAACAGAT
GGAAACAGCTCTGCCGATTGGAATCTAGTAAATACTATTTGTTTGCGCGAGGTGTTTGGTCATCTTGTGAAGCCTAGTTG
GGAGTCAGGGGATTCACGCATTAGTCTGCCTGGGTCTGGGGACAANGCTGAGTTTGTGTTCTTGGAGGTGGATGGTGAGG
TCTTTTGCATGGATATTATCAGCAGGACAGTGGAGAAGGTGTATGAGATNGCAATGAAGGATGATTTTCTATTTGAGATA
TACCCCTTCATGATGGTTTGGCCACCAATCTTCCCAGCATTGATCAAAACACATGAACCAGAGTGATTCNACAAGGTTTC
CCTCGAGATGATTTGCATAATCAAGTGATGATATATGATGATTCTGCTACTTCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis