Browse Element(s) Details


OsAffx.2680.1.S1_at

Description tigr:9630.m01827
TID=OsAffx.2680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2H2-type zinc finger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1918010/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19140Os.18886.1.S1_at11/112+11157043..11161165Ubiquitin ligase SINAT3, putative, expressed
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein
LOC_Os02g19180OsAffx.2680.1.S1_at10/112+11182943..11184386Zinc finger, C2H2 type family protein
LOC_Os02g19200Os.27049.1.S2_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19200Os.27049.1.S1_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2680.1.S1_at--423--4411Chr02:11184029..11184053 (25 bp)
GCCAGCCAGTTCACGCTCAGGGAGC
LOC_Os02g19180
OsAffx.2680.1.S1_at--965--2671Chr02:11183807..11183831 (25 bp)
AAGCGGTGCCACTGGCCGGATCGTT
LOC_Os02g19180
OsAffx.2680.1.S1_at--227--10671Chr02:11183784..11183808 (25 bp)
TTCCTGTGCCGATCAGGCGATATCG
LOC_Os02g19180
OsAffx.2680.1.S1_at--709--1791Chr02:11183744..11183768 (25 bp)
ACCGCCGGCAGCAGTAGTACCACTA
LOC_Os02g19180
OsAffx.2680.1.S1_at--942--3811NONE
CTCCATTGGCGCTTTGGTGTATATT
NONE
OsAffx.2680.1.S1_at--600--4891Chr02:11183398..11183422 (25 bp)
GCTTTTGCTAGATTTGTGTTTGTTA
LOC_Os02g19180
OsAffx.2680.1.S1_at--780--3151Chr02:11183373..11183397 (25 bp)
AATTCCATTCGAGGCATAAGCGGCT
LOC_Os02g19180
OsAffx.2680.1.S1_at--587--9791Chr02:11183357..11183381 (25 bp)
TAAGCGGCTCTCTGGAATGGAAATC
LOC_Os02g19180
OsAffx.2680.1.S1_at--886--10451Chr02:11183321..11183345 (25 bp)
TTAGCTTTGGTTACGTGTGCCTGGT
LOC_Os02g19180
OsAffx.2680.1.S1_at--888--9171Chr02:11183304..11183328 (25 bp)
TGCCTGGTTCAGATAAGAGCGTTTC
LOC_Os02g19180
OsAffx.2680.1.S1_at--458--5871Chr02:11183288..11183312 (25 bp)
GAGCGTTTCTAATCGTTCTGAACAC
LOC_Os02g19180
Target Sequence 
GCCAGCCAGTTCACGCTCAGGGAGCGCGAGGTCGCCGCCAGCCTCCTCATGCTGTCCGGCGCTCACCCCGCCCGCTCCGG
CGCCGGCAAGGGCAAGGGCAAGAAGCGCCTTCTCGCCCCCGCCGCCGCCGCTGCTCCTCATCATTCCCCGGCAACCTGCG
CCGACCACAAGTGCGCCGTCTGCCACCGCGGGTTCGCCACCGGCCAGGCGCTCGGCGGCCACAAGCGGTGCCACTGGCCG
GATCGTTCCTGTGCCGATCAGGCGATATCGATGCTCGCCGTCTCCACCGCCGGCAGCAGTAGTACCACTACCACGTCGGC
ATCACCTCCGCCGGCGCCGGCGACCGCCGCCACCGCGCTGGACCTCAACCTGAACCTGCCGCCTCCATTGGCGCTTTGGT
GTATATTGCTTTTGCTAGATTTGTGTTTGTTAAATTCCATTCGAGGCATAAGCGGCTCTCTGGAATGGAAATCTCTGCAA
GTTCTTAGCTTTGGTTACGTGTGCCTGGTTCAGATAAGAGCGTTTCTAATCGTTCTGAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis