Browse Element(s) Details


OsAffx.24321.1.S1_at

Description tigr:9630.m01825
TID=OsAffx.24321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1916011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19120OsAffx.2678.1.S1_at11/112+11151271..11152371hypothetical protein
LOC_Os02g19130OsAffx.2679.1.S1_at11/112+11153618..11156239XS domain containing protein, expressed
LOC_Os02g19140Os.18886.1.S1_at11/112+11157043..11161165Ubiquitin ligase SINAT3, putative, expressed
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein
LOC_Os02g19180OsAffx.2680.1.S1_at10/112+11182943..11184386Zinc finger, C2H2 type family protein
LOC_Os02g19200Os.27049.1.S2_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19200Os.27049.1.S1_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24321.1.S1_at--335--4411Chr02:11176074..11176098 (25 bp)
GCCACTCGCGTCACCAACGTTGTTG
LOC_Os02g19160
OsAffx.24321.1.S1_at--771--4631Chr02:11176067..11176091 (25 bp)
GCGTCACCAACGTTGTTGCCGTACT
LOC_Os02g19160
OsAffx.24321.1.S1_at--1000--10751Chr02:11176055..11176079 (25 bp)
TTGTTGCCGTACTCGGGCTCGCGGC
LOC_Os02g19160
OsAffx.24321.1.S1_at--772--4791Chr02:11176039..11176063 (25 bp)
GCTCGCGGCTTTCGTCGGCGTCATC
LOC_Os02g19160
OsAffx.24321.1.S1_at--592--3271Chr02:11176012..11176036 (25 bp)
CAACAAAGCTGTCCCTATCCTCGAC
LOC_Os02g19160
OsAffx.24321.1.S1_at--591--4391Chr02:11175963..11175987 (25 bp)
GCCAACGAACTCACTTCTCTGTTAG
LOC_Os02g19160
OsAffx.24321.1.S1_at--800--2591Chr02:11175960..11175984 (25 bp)
AACGAACTCACTTCTCTGTTAGCTC
LOC_Os02g19160
OsAffx.24321.1.S1_at--956--2531Chr02:11175956..11175980 (25 bp)
AACTCACTTCTCTGTTAGCTCTCAA
LOC_Os02g19160
OsAffx.24321.1.S1_at--835--2051Chr02:11175951..11175975 (25 bp)
ACTTCTCTGTTAGCTCTCAATCGCG
LOC_Os02g19160
OsAffx.24321.1.S1_at--394--8791Chr02:11175944..11175968 (25 bp)
TGTTAGCTCTCAATCGCGTCGCCAT
LOC_Os02g19160
OsAffx.24321.1.S1_at--639--4111Chr02:11175878..11175902 (25 bp)
CCCTTTTGCCGTCGAACATCGAAAT
LOC_Os02g19160
Target Sequence 
GCCACTCGCGTCACCAACGTTGTTGCCGTACTCGGGCTCGCGGCTTTCGTCGGCGTCATCGCCAACAAAGCTGTCCCTAT
CCTCGACCTCCCGGCTTCCGTCGGCATTGCCGCCAACGAACTCACTTCTCTGTTAGCTCTCAATCGCGTCGCCATCGAGC
TTTCCTCCCGCTGCATCATTTCGCCCGTCGCTCCGCCCCTTTTGCCGTCGAACATCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis