Browse Element(s) Details


OsAffx.2678.1.S1_at

Description tigr:9630.m01821
TID=OsAffx.2678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1912011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified
LOC_Os02g19110OsAffx.24320.1.S1_at11/112+11148744..11149016hypothetical protein
LOC_Os02g19120OsAffx.2678.1.S1_at11/112+11151271..11152371hypothetical protein
LOC_Os02g19130OsAffx.2679.1.S1_at11/112+11153618..11156239XS domain containing protein, expressed
LOC_Os02g19140Os.18886.1.S1_at11/112+11157043..11161165Ubiquitin ligase SINAT3, putative, expressed
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2678.1.S1_at--110--9491Chr02:11152312..11152336 (25 bp)
TCTGCTTCTGCTTGGCTTGGATGCA
LOC_Os02g19120
OsAffx.2678.1.S1_at--905--10591Chr02:11152307..11152331 (25 bp)
TTCTGCTTGGCTTGGATGCAGGTGC
LOC_Os02g19120
OsAffx.2678.1.S1_at--590--3611Chr02:11152302..11152326 (25 bp)
CTTGGCTTGGATGCAGGTGCAGAAA
LOC_Os02g19120
OsAffx.2678.1.S1_at--684--6331Chr02:11152293..11152317 (25 bp)
GATGCAGGTGCAGAAATGTGTTATG
LOC_Os02g19120
OsAffx.2678.1.S1_at--1151--3411Chr02:11152283..11152307 (25 bp)
CAGAAATGTGTTATGAGCAGGCAAA
LOC_Os02g19120
OsAffx.2678.1.S1_at--1148--8211Chr02:11152264..11152288 (25 bp)
GGCAAAGAAGCGAGATGAACCTACA
LOC_Os02g19120
OsAffx.2678.1.S1_at--274--1651Chr02:11152256..11152280 (25 bp)
AGCGAGATGAACCTACAACAACAAC
LOC_Os02g19120
OsAffx.2678.1.S1_at--344--1431Chr02:11152235..11152254 (20 bp)
AGAAAAGGAGCACGCAGACGCCTGC
LOC_Os02g19120
OsAffx.2678.1.S1_at--313--6871Chr02:11151320..11151344 (25 bp)
GTTTGGTTTTGCACGGATCCGGCGT
LOC_Os02g19120
OsAffx.2678.1.S1_at--353--7851Chr02:11151316..11151340 (25 bp)
GGTTTTGCACGGATCCGGCGTTGCC
LOC_Os02g19120
OsAffx.2678.1.S1_at--367--4251Chr02:11151302..11151326 (25 bp)
CCGGCGTTGCCGTGTTGCACAGGAT
LOC_Os02g19120
Target Sequence 
TCTGCTTCTGCTTGGCTTGGATGCAGGTGCAGAAATGTGTTATGAGCAGGCAAAGAAGCGAGATGAACCTACAACAACAA
CAAGAAAAGGAGCACGCAGACGCCTGCCAAATCTGCCATGGATGGATGGATGGATGGATGCTTTTTGTTTGGTTTTGCAC
GGATCCGGCGTTGCCGTGTTGCACAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis