Browse Element(s) Details


OsAffx.2679.1.S1_at

Description tigr:9630.m01822
TID=OsAffx.2679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1913011/11XS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified
LOC_Os02g19110OsAffx.24320.1.S1_at11/112+11148744..11149016hypothetical protein
LOC_Os02g19120OsAffx.2678.1.S1_at11/112+11151271..11152371hypothetical protein
LOC_Os02g19130OsAffx.2679.1.S1_at11/112+11153618..11156239XS domain containing protein, expressed
LOC_Os02g19140Os.18886.1.S1_at11/112+11157043..11161165Ubiquitin ligase SINAT3, putative, expressed
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2679.1.S1_at--22--2591Chr02:11155388..11155412 (25 bp)
AACGTACTGACGAGCTGACTGAGGA
LOC_Os02g19130
OsAffx.2679.1.S1_at--899--8931Chr02:11155395..11155419 (25 bp)
TGACGAGCTGACTGAGGAACTAAAT
LOC_Os02g19130
OsAffx.2679.1.S1_at--1157--8191Chr02:11155446..11155470 (25 bp)
GGAAGGTCTGAATCAAACTCTCATT
LOC_Os02g19130
OsAffx.2679.1.S1_at--297--2191Chr02:11155486..11155510 (25 bp)
ACAAATGATGAACTGCAAGATGCCA
LOC_Os02g19130
OsAffx.2679.1.S1_at--843--4371Chr02:11155508..11155528 (21 bp)
CCAAGAAAGCGCTGATTTCTGGCTT
LOC_Os02g19130
OsAffx.2679.1.S1_at--147--4891Chr02:11155677..11155701 (25 bp)
GCTTATCAGAATTGTTAGGCCCTCG
LOC_Os02g19130
OsAffx.2679.1.S1_at--401--3171Chr02:11155686..11155710 (25 bp)
AATTGTTAGGCCCTCGTAGCACCAT
LOC_Os02g19130
OsAffx.2679.1.S1_at--899--6951Chr02:11155701..11155725 (25 bp)
GTAGCACCATCGGACTCAAGAGAAT
LOC_Os02g19130
OsAffx.2679.1.S1_at--776--5891Chr02:11155730..11155754 (25 bp)
GAGCTGGATGAGAAACCCTTCCTTG
LOC_Os02g19130
OsAffx.2679.1.S1_at--45--1431Chr02:11155740..11155764 (25 bp)
AGAAACCCTTCCTTGCAGCTTGCAA
LOC_Os02g19130
OsAffx.2679.1.S1_at--1162--2891Chr02:11155768..11155792 (25 bp)
AAGGTATGGTACTGCTGACGGTGAA
LOC_Os02g19130
Target Sequence 
AACGTACTGACGAGCTGACTGAGGAACTAAATGAGAAGATTGAGGAGATGGAATATATGGAAGGTCTGAATCAAACTCTC
ATTATCAAAGAAAGGAAGACAAATGATGAACTGCAAGATGCCAAGAAAGCGCTGATTTCTGGCTTATCAGAATTGTTAGG
CCCTCGTAGCACCATCGGACTCAAGAGAATGGGCGAGCTGGATGAGAAACCCTTCCTTGCAGCTTGCAAGAAAAGGTATG
GTACTGCTGACGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis