Browse Element(s) Details


OsAffx.24319.1.S1_at

Description tigr:9630.m01816
TID=OsAffx.24319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1907011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g19050OsAffx.12114.1.S1_at11/112+11124176..11124706hypothetical protein
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified
LOC_Os02g19110OsAffx.24320.1.S1_at11/112+11148744..11149016hypothetical protein
LOC_Os02g19120OsAffx.2678.1.S1_at11/112+11151271..11152371hypothetical protein
LOC_Os02g19130OsAffx.2679.1.S1_at11/112+11153618..11156239XS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24319.1.S1_at--531--391Chr02:11130471..11130495 (25 bp)
ATCACCTGGGTTATGAATGGCATGG
LOC_Os02g19070
OsAffx.24319.1.S1_at--1005--8051Chr02:11130443..11130467 (25 bp)
GGAGCAGCGTGCAGGCTGAACTTTT
LOC_Os02g19070
OsAffx.24319.1.S1_at--1095--5931Chr02:11130442..11130466 (25 bp)
GAGCAGCGTGCAGGCTGAACTTTTT
LOC_Os02g19070
OsAffx.24319.1.S1_at--567--911Chr02:11130431..11130455 (25 bp)
AGGCTGAACTTTTTCTGCATGTCGG
LOC_Os02g19070
OsAffx.24319.1.S1_at--736--8331Chr02:11130430..11130454 (25 bp)
GGCTGAACTTTTTCTGCATGTCGGT
LOC_Os02g19070
OsAffx.24319.1.S1_at--692--3851Chr02:11130428..11130452 (25 bp)
CTGAACTTTTTCTGCATGTCGGTGT
LOC_Os02g19070
OsAffx.24319.1.S1_at--975--8971Chr02:11130427..11130451 (25 bp)
TGAACTTTTTCTGCATGTCGGTGTT
LOC_Os02g19070
OsAffx.24319.1.S1_at--172--5311Chr02:11130369..11130393 (25 bp)
GAAGTCAACAGGGTTGCGGCGCGAA
LOC_Os02g19070
OsAffx.24319.1.S1_at--897--7671Chr02:11130359..11130383 (25 bp)
GGGTTGCGGCGCGAAGCTGCCGGTG
LOC_Os02g19070
OsAffx.24319.1.S1_at--1152--4211Chr02:11130333..11130357 (25 bp)
CCGCGGAGTATGACATCATGGAGGA
LOC_Os02g19070
OsAffx.24319.1.S1_at--45--3971Chr02:11130330..11130354 (25 bp)
CGGAGTATGACATCATGGAGGAGAT
LOC_Os02g19070
Target Sequence 
ATCACCTGGGTTATGAATGGCATGGGGTGGAGCAGCGTGCAGGCTGAACTTTTTCTGCATGTCGGTGTTGTCATCGGGGA
AGAAGGTTGTCGAGCTGAGAAGGAAGTCAACAGGGTTGCGGCGCGAAGCTGCCGGTGGCCGCGGAGTATGACATCATGGA
GGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis