Browse Element(s) Details


OsAffx.12114.1.S1_at

Description tigr:9630.m01814
TID=OsAffx.12114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1905011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g19050OsAffx.12114.1.S1_at11/112+11124176..11124706hypothetical protein
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified
LOC_Os02g19110OsAffx.24320.1.S1_at11/112+11148744..11149016hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12114.1.S1_at--511--4071Chr02:11124281..11124305 (25 bp)
CGAGGGCGGGACGTGGAGCTGCGAA
LOC_Os02g19050
OsAffx.12114.1.S1_at--935--3691Chr02:11124334..11124358 (25 bp)
CTATGAGGGCAGAGGCTGCGGCATC
LOC_Os02g19050
OsAffx.12114.1.S1_at--739--6131Chr02:11124372..11124396 (25 bp)
GAGGGCATAGGCTGTGGCGTCGGCG
LOC_Os02g19050
OsAffx.12114.1.S1_at--270--931Chr02:11124489..11124513 (25 bp)
AGGCAGTCGCCAGCGAAAGGCTCTG
LOC_Os02g19050
OsAffx.12114.1.S1_at--744--3371Chr02:11124499..11124523 (25 bp)
CAGCGAAAGGCTCTGCACGCAGTCG
LOC_Os02g19050
OsAffx.12114.1.S1_at--1046--8491Chr02:11124537..11124561 (25 bp)
TGGCAACAGCGGTGGACCTTGCTGC
LOC_Os02g19050
OsAffx.12114.1.S1_at--1059--1731Chr02:11124552..11124576 (25 bp)
ACCTTGCTGCCCTGCGCGGAAGAGG
LOC_Os02g19050
OsAffx.12114.1.S1_at--1083--6151Chr02:11124605..11124629 (25 bp)
GAGGAGTCCTCCTATGGAACGCCGC
LOC_Os02g19050
OsAffx.12114.1.S1_at--339--5451Chr02:11124621..11124645 (25 bp)
GAACGCCGCCACTGCTTGATCGAGG
LOC_Os02g19050
OsAffx.12114.1.S1_at--779--8111Chr02:11124644..11124668 (25 bp)
GGACGAGGTCAAGCTCAAGGCCATA
LOC_Os02g19050
OsAffx.12114.1.S1_at--496--7831Chr02:11124650..11124674 (25 bp)
GGTCAAGCTCAAGGCCATATCTGCA
LOC_Os02g19050
Target Sequence 
CGAGGGCGGGACGTGGAGCTGCGAAGGGCGGCGGTTGCGGCGTCGGCGTGGAGCTATGAGGGCAGAGGCTGCGGCATCGG
CGTGCAGCTGCGAGGGCATAGGCTGTGGCGTCGGCGTGTGGTTGTGAGGGCGGGGCGTGGAGCTGCGAGGGCGGTGGCTG
CGGCGTCAGCGTGGAGCTGCGAGGGCGGCGGCGCTGCCATGGTCGCGGAGGCAGTCGCCAGCGAAAGGCTCTGCACGCAG
TCGCCAGCGAGGAGAGTGGCAACAGCGGTGGACCTTGCTGCCCTGCGCGGAAGAGGCGGACCTCGCCGGAGCCACACGCG
TGGGGAGGAGTCCTCCTATGGAACGCCGCCACTGCTTGATCGAGGACGAGGTCAAGCTCAAGGCCATATCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis