Browse Element(s) Details


Os.54861.1.S1_x_at

Description gb:AK106941.1
DB_XREF= gi:32992150
TID=Os.54861.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D05, full insert sequence.
FL= gb:AK106941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1906011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g19050OsAffx.12114.1.S1_at11/112+11124176..11124706hypothetical protein
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified
LOC_Os02g19110OsAffx.24320.1.S1_at11/112+11148744..11149016hypothetical protein
LOC_Os02g19120OsAffx.2678.1.S1_at11/112+11151271..11152371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54861.1.S1_x_at--110--8991Chr02:11126815..11126839 (25 bp)
TGAACGTGCAGTCCATCCGGTACTA
LOC_Os02g19060
Os.54861.1.S1_x_at--1067--8971Chr02:11126770..11126794 (25 bp)
TGAACGTGCCGGTGCGCCTGATCCA
LOC_Os02g19060
Os.54861.1.S1_x_at--673--1571Chr02:11126687..11126711 (25 bp)
AGCTACTTCTGGTCGCTCGGCGCGC
LOC_Os02g19060
Os.54861.1.S1_x_at--1088--10651Chr02:11126570..11126594 (25 bp)
TTCCTCGACGTTTGCGACGACTGGG
LOC_Os02g19060
Os.54861.1.S1_x_at--344--4091Chr02:11126556..11126580 (25 bp)
CGACGACTGGGAGGAGGAACACCAA
LOC_Os02g19060
Os.54861.1.S1_x_at--507--5491Chr02:11126540..11126564 (25 bp)
GAACACCAAGACCACGACGAGCAGG
LOC_Os02g19060
Os.54861.1.S1_x_at--727--971Chr02:11126490..11126514 (25 bp)
AGGAGAAGCGAAGGTCTGAGCCTAT
LOC_Os02g19060
Os.54861.1.S1_x_at--852--4591Chr02:11126483..11126507 (25 bp)
GCGAAGGTCTGAGCCTATGTGTGTT
LOC_Os02g19060
Os.54861.1.S1_x_at--468--791Chr02:11126467..11126491 (25 bp)
ATGTGTGTTAGGATGCTACGTAGAT
LOC_Os02g19060
Os.54861.1.S1_x_at--906--10311Chr02:11126411..11126435 (25 bp)
TTTCAGGTAATAAGACGTTAAGTCA
LOC_Os02g19060
Os.54861.1.S1_x_at--433--5771Chr02:11126398..11126422 (25 bp)
GACGTTAAGTCAAAAGTCAAACTAG
LOC_Os02g19060
Target Sequence 
TGAACGTGCAGTCCATCCGGTACTACAGCCACACCAGCACCCTCGTGAACGTGCCGGTGCGCCTGATCCAGCGCCGCCGC
CGCCCGGGCCTCGCCGTCGACTACGTCACCGCGACGCTCAACCGCGGCAGCTACTTCTGGTCGCTCGGCGCGCGCGCCTT
CTACTTCTCCTGCCCGGTCTTCCTCTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCCTGCGCCGCCATGGTCTGCGCGC
TCTACTTCCTCGACGTTTGCGACGACTGGGAGGAGGAACACCAAGACCACGACGAGCAGGATGGAAGCGGGAGTGATGAG
AGATCAGGAGAAGCGAAGGTCTGAGCCTATGTGTGTTAGGATGCTACGTAGATAATTTTTTTTTAAAAAAAAGTACTTCC
TCCGTTTCAGGTAATAAGACGTTAAGTCAAAAGTCAAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54861.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis