Browse Element(s) Details


Os.52113.1.S1_at

Description gb:AK064746.1
DB_XREF= gi:32974764
TID=Os.52113.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E06, full insert sequence.
FL= gb:AK064746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g190001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18954Os.54094.1.S1_at10/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.32544.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.50295.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18970NANA2+11083113..11086850retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18980NANA2+11089999..11091500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18990OsAffx.24316.1.S1_at11/112+11093807..11097790GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g19050OsAffx.12114.1.S1_at11/112+11124176..11124706hypothetical protein
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52113.1.S1_at--575--1531Chr09:5192196..5192220 (25 bp)
AGCAGGGTCCTCAGCCGACGAGGAC
NONE
Os.52113.1.S1_at--256--7791Chr09:5192163..5192187 (25 bp)
GGTGCCACCGGATTCATTTTTTTGA
NONE
Os.52113.1.S1_at--460--9796Chr03:23659392..23659413 (22 bp)
TAAGCACCCACACGCGAAAATCAGA
NONE
Os.52113.1.S1_at--166--2273Chr04:1645124..1645147 (24 bp)
AAATCAGATTTTCGCTTGCGGGTGC
NONE
Os.52113.1.S1_at--92--1272Chr05:5325451..5325472 (22 bp)
AGATTTTCGCTTGCGGGTGCGCCAC
NONE
Os.52113.1.S1_at--576--3071Chr09:5192043..5192067 (25 bp)
AATCATGATTTTCGCAGATCCTTGG
NONE
Os.52113.1.S1_at--131--10391Chr09:5192035..5192059 (25 bp)
TTTTCGCAGATCCTTGGGTGCGTGA
NONE
Os.52113.1.S1_at--296--10272Chr09:5191980..5192004 (25 bp)
TTGACCGCACGGAAAAACCGCTCTT
NONE
Os.52113.1.S1_at--37--8151Chr09:5191970..5191994 (25 bp)
GGAAAAACCGCTCTTCTAGTACTGT
NONE
Os.52113.1.S1_at--184--4831Chr09:5191961..5191985 (25 bp)
GCTCTTCTAGTACTGTTTCGACATT
NONE
Os.52113.1.S1_at--1091--6991Chr09:5191952..5191976 (25 bp)
GTACTGTTTCGACATTAGACAACAT
NONE
Target Sequence 
AGCAGGGTCCTCAGCCGACGAGGACGATGAGGCGGTGCCACCGGATTCATTTTTTTGAAAAATTTTTGGATTTTTGTTTT
TTCGTGCGCCCGACATAAGCACCCACACGCGAAAATCAGATTTTCGCTTGCGGGTGCGCCACCCGCATGCAAAAATCATG
ATTTTCGCAGATCCTTGGGTGCGTGAGGGCCACCCTCCCGCACGCGAAAATCACATTTGACCGCACGGAAAAACCGCTCT
TCTAGTACTGTTTCGACATTAGACAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis