Browse Element(s) Details


OsAffx.24316.1.S1_at

Description tigr:9630.m01807
TID=OsAffx.24316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1899011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18954Os.54094.1.S1_at10/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.32544.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.50295.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18970NANA2+11083113..11086850retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18980NANA2+11089999..11091500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18990OsAffx.24316.1.S1_at11/112+11093807..11097790GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24316.1.S1_at--657--3971Chr02:11097266..11097290 (25 bp)
CGGTGACGGAGCAGCCGCACAGCCA
LOC_Os02g18990
OsAffx.24316.1.S1_at--76--5231Chr02:11097321..11097345 (25 bp)
GAACGCCCTCGCGAGGGAGTTCAAC
LOC_Os02g18990
OsAffx.24316.1.S1_at--1034--9891Chr02:11097400..11097424 (25 bp)
TACTCTGTCGCCGATTTCTACGGCT
LOC_Os02g18990
OsAffx.24316.1.S1_at--791--4031Chr02:11097411..11097435 (25 bp)
CGATTTCTACGGCTTCTCCAATGCC
LOC_Os02g18990
OsAffx.24316.1.S1_at--762--10531Chr02:11097439..11097461 (23 bp)
TTCATGAACCCGTCGGCTAATGGGT
LOC_Os02g18990
OsAffx.24316.1.S1_at--254--811Chr02:11097578..11097600 (23 bp)
ATGGGTTTACGAACACTGATGCTGC
LOC_Os02g18990
OsAffx.24316.1.S1_at--282--631Chr02:11097594..11097618 (25 bp)
ATGCTGCGTGCTGCAAAGGGCCCTG
LOC_Os02g18990
OsAffx.24316.1.S1_at--933--5131Chr02:11097606..11097630 (25 bp)
GCAAAGGGCCCTGCAATGAGCAGTT
LOC_Os02g18990
OsAffx.24316.1.S1_at--433--9011Chr02:11097617..11097641 (25 bp)
TGCAATGAGCAGTTCGGAGCGCCGT
LOC_Os02g18990
OsAffx.24316.1.S1_at--204--5071Chr02:11097710..11097734 (25 bp)
GCAGCTGCATTTTACGACGGAGAAC
LOC_Os02g18990
OsAffx.24316.1.S1_at--304--5751Chr02:11097725..11097749 (25 bp)
GACGGAGAACGCCAGTTCACCACGC
LOC_Os02g18990
Target Sequence 
CGGTGACGGAGCAGCCGCACAGCCACAGCCCCGTCGGCGGTTGCGACGACCGGATGAACGCCCTCGCGAGGGAGTTCAAC
GACGGATTGGGGTCTCTCATGGCCGGGCTGAGCTCCTCCCTCCCCGGCCTCCGCTACTCTGTCGCCGATTTCTACGGCTT
CTCCAATGCCACCTTCATGAACCCGTCGGCTAATGGGTTTACGAACACTGATGCTGCGTGCTGCAAAGGGCCCTGCAATG
AGCAGTTCGGAGCGCCGTGTGGGAACCGGAGGGAGTACTGGTTCTGGGACGTGGGGCACACCACGGAGAAGGCCGCTAAG
CTGGCAGCAGCTGCATTTTACGACGGAGAACGCCAGTTCACCACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis