Browse Element(s) Details


Os.27077.1.A1_at

Description gb:AK121081.1
DB_XREF= gi:37990704
TID=Os.27077.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063D06, full insert sequence.
FL= gb:AK121081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5838010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27077.1.A1_at--150--9911NONE
TACTCCTTGGAGTGCTTCAATGCTT
NONE
Os.27077.1.A1_at--845--3651Chr04:34515180..34515204 (25 bp)
CTTCAATGCTTGTGTTTCTGGATGT
LOC_Os04g58380
Os.27077.1.A1_at--141--5891Chr04:34514967..34514991 (25 bp)
GAGCGGGCCACGAATTCAGAACCTG
LOC_Os04g58380
Os.27077.1.A1_at--401--1391Chr04:34514929..34514953 (25 bp)
AGACGTGCCTTGCACATCAGCATAA
LOC_Os04g58380
Os.27077.1.A1_at--729--3091Chr04:34514906..34514930 (25 bp)
AATAGTAATCTATGCAGCCCCAAAT
LOC_Os04g58380
Os.27077.1.A1_at--334--9731Chr04:34514875..34514899 (25 bp)
TAACTTTTGGTGCTTCTTTCCCTCA
LOC_Os04g58380
Os.27077.1.A1_at--823--8651Chr04:34514824..34514848 (25 bp)
TGGGCTGTTTCTTTGCACCATGTGC
LOC_Os04g58380
Os.27077.1.A1_at--254--4931Chr04:34514801..34514825 (25 bp)
GCTTGAAATTCGCAGTCCACCTTAG
LOC_Os04g58380
Os.27077.1.A1_at--1127--4351Chr04:34514785..34514809 (25 bp)
CCACCTTAGGCTGGGCTAGATGCTA
LOC_Os04g58380
Os.27077.1.A1_at--254--51Chr04:34514699..34514723 (25 bp)
ATTGTATGTTAGTATGCTCCCTCCG
LOC_Os04g58380
Os.27077.1.A1_at--74--8011Chr04:34514665..34514689 (25 bp)
GGATGGCGCCGTTGTTAATAATACT
LOC_Os04g58380
Target Sequence 
TACTCCTTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAGAAAGTGGAGCAAAT
CAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCAGTAGAGCGGGCCACGAATTCAGAACCTGCTGTGA
AGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTT
CCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAG
GCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTATTTATATTTTCATATGCTTGTTCATCCACATT
GTATGTTAGTATGCTCCCTCCGTTCCTTTGTGGATGGCGCCGTTGTTAATAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27077.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis