Browse Element(s) Details


Os.27096.1.S1_at

Description gb:AK067722.1
DB_XREF= gi:32977740
TID=Os.27096.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120F02, full insert sequence.
FL= gb:AK067722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3253011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein
LOC_Os02g32520Os.11935.1.S1_at11/112+19245486..19250435ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os02g32530Os.27096.1.S1_at11/112+19251050..19254173expressed protein
LOC_Os02g32530Os.39005.1.S1_s_at11/112+19251050..19254173expressed protein
LOC_Os02g32540Os.53774.1.S1_at10/112+19254317..19256331expressed protein
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27096.1.S1_at--571--6271Chr02:19251854..19251878 (25 bp)
GATGTTTTATCCAGTATTCCTTGTA
LOC_Os02g32530
Os.27096.1.S1_at--1161--6831Chr02:19251841..19251865 (25 bp)
GTATTCCTTGTAGCTTACTAGTTCT
LOC_Os02g32530
Os.27096.1.S1_at--729--10051Chr02:19251823..19251847 (25 bp)
TAGTTCTACCTGTTAATTCATTCTG
LOC_Os02g32530
Os.27096.1.S1_at--173--5351Chr02:19251785..19251809 (25 bp)
GAAGTTCTCAAAGCCACAGAGCGAG
LOC_Os02g32530
Os.27096.1.S1_at--494--6171Chr02:19251763..19251787 (25 bp)
GAGGATCTGTACTACTCCCGTGCAA
LOC_Os02g32530
Os.27096.1.S1_at--74--5331Chr02:19251689..19251713 (25 bp)
GAAGGGTCTACTCACTGATCAAACT
LOC_Os02g32530
Os.27096.1.S1_at--996--9231Chr02:19251568..19251681 (25 bp)
TCCTTACCGACAGTGCTCTGAGAGA
LOC_Os02g32530
Os.27096.1.S1_at--977--8131Chr02:19251339..19251363 (25 bp)
GGAAAAGCACGGTGAAGCCTCTCAG
LOC_Os02g32530
Os.27096.1.S1_at--1124--8311Chr02:19251309..19251333 (25 bp)
GGCTCATGGCTCCTTGGATTGCGTA
LOC_Os02g32530
Os.27096.1.S1_at--536--3611Chr02:19251297..19251321 (25 bp)
CTTGGATTGCGTAGGACTGTATTAT
LOC_Os02g32530
Os.27096.1.S1_at--547--711Chr02:19251244..19251268 (25 bp)
ATGATATGCTTCCTAGGCAACGTAT
LOC_Os02g32530
Target Sequence 
GATGTTTTATCCAGTATTCCTTGTAGCTTACTAGTTCTACCTGTTAATTCATTCTGTTCAGATTGGGCAGAAGTTCTCAA
AGCCACAGAGCGAGGATCTGTACTACTCCCGTGCAAGGAGCATGCTNCANNAACTAGGCCTCGAGAAATATGAGAAGAAT
TTTAAGAAGGGTCTACTCACTGATCAAACTTTGCCTCTCCTTACCGACAGTGCTCTGAGAGATGTGAAGATTCCCCCTGG
CCCCAGACTTNTGATACTCGATCAAATTAAAAGGGATCCTGAGTTTGGAAAAGCACGGTGAAGCCTCTCAGCCCTTGGCT
CATGGCTCCTTGGATTGCGTAGGACTGTATTATCTGAAGCTATGCCATCTTTGTTTTTTTTATGATATGCTTCCTAGGCA
ACGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis