Browse Element(s) Details


Os.27114.1.S1_at

Description gb:AK063296.1
DB_XREF= gi:32973314
TID=Os.27114.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E10, full insert sequence.
FL= gb:AK063296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4637010/11L-asparaginase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein
LOC_Os04g46390Os.10148.1.S1_at11/114+27286392..27290953DnaJ protein homolog, putative, expressed
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006516biological_processglycoprotein catabolism
GO:0004067molecular_functionasparaginase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27114.1.S1_at--979--1711Chr04:27276520..27276544 (25 bp)
ACCAGGATCTTCTGCATATGCTGAT
LOC_Os04g46370
Os.27114.1.S1_at--470--7411Chr04:27276461..27276485 (25 bp)
GTGATATTATGATGCGCTTCCTTCC
LOC_Os04g46370
Os.27114.1.S1_at--533--4911NONE
GCTTCCTTCCGTGTTATCAGGTAGT
NONE
Os.27114.1.S1_at--173--4991Chr04:27275728..27275752 (25 bp)
GCATGCCACGGATGGACATTCCAGT
LOC_Os04g46370
Os.27114.1.S1_at--589--8611Chr04:27275624..27275648 (25 bp)
TGGTGCGTCACCAATATGGCATTTT
LOC_Os04g46370
Os.27114.1.S1_at--116--211Chr04:27275581..27275605 (25 bp)
ATTTCCATTCACCAGCAGGTCATGT
LOC_Os04g46370
Os.27114.1.S1_at--743--1471Chr04:27275544..27275568 (25 bp)
AGAATTTTCATCATTCAGTCCCCTG
LOC_Os04g46370
Os.27114.1.S1_at--20--1151Chr04:27275528..27275552 (25 bp)
AGTCCCCTGTCAATGCAGCAATGTT
LOC_Os04g46370
Os.27114.1.S1_at--401--10411Chr04:27275481..27275505 (25 bp)
TTATTGGATTGCACTCCTCCTGGAA
LOC_Os04g46370
Os.27114.1.S1_at--1097--9271Chr04:27275464..27275488 (25 bp)
TCCTGGAAGTTCAGACGGCCTTGTA
LOC_Os04g46370
Os.27114.1.S1_at--57--1751Chr04:27275406..27275430 (25 bp)
ACCTCGTCTGAGTGTTGTCTAAAAG
LOC_Os04g46370
Target Sequence 
ACCAGGATCTTCTGCATATGCTGATGATGAAGTTGGTGCATGTGGAGCAACTGGTGATGGTGATATTATGATGCGCTTCC
TTCCGTGTTATCAGGTAGTAGAGAGCATGCGACGAGGGATGGAGCCTCGGGATGCTGCCATGGATGCTATATTAAGAATT
GCCCGCAAGTACCCGGACTTTGNTGGTGCTGTATTTNGCAATTAACAAGAAAGGAGTGCATGCTGGGGCATGCCACGGAT
GGACATTCCAGTATTCTGTCAGGNAATTCTAGCATGCANGATGNNGGNAGGTCATCACTGTATCACCTTNACATGGGCAG
ATCGTAACAGCATATGGTGCGTCACCAATATGGCATTTTTCGAACTGGGGATACCCCATTTCCATTCACCAGCAGGTCAT
GTTTCTCATGATCTAGAATTTTCATCATTCAGTCCCCTGTCAATGCAGCAATGTTATTTGGGGATTGTACTGGCTTATTA
TTGGATTGCACTCCTCCTGGAAGTTCAGACGGCCTTGTAAGCAGATTGGATGCACTCAATTCATTCTTAATAACCTCGTC
TGAGTGTTGTCTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis