Browse Element(s) Details


Os.27120.1.S1_at

Description gb:AK100078.1
DB_XREF= gi:32985287
TID=Os.27120.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001J17, full insert sequence.
FL= gb:AK100078.1 gb:AK120706.1 gb:AK104486.1 gb:AK060879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0129011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27120.1.S1_at--901--3051Chr08:183954..183978 (25 bp)
AATCTTCACAGTTGGAGCAGCAGCA
LOC_Os08g01290
Os.27120.1.S1_at--498--4931Chr08:184151..184175 (25 bp)
GCTTGTGAATAACATACATCAGTAC
LOC_Os08g01290
Os.27120.1.S1_at--1009--10011Chr08:184213..184237 (25 bp)
TAGTATAAACATCAGTCAGTCTCGT
LOC_Os08g01290
Os.27120.1.S1_at--84--3571Chr08:184222..184246 (25 bp)
CATCAGTCAGTCTCGTTGTGTGCAG
LOC_Os08g01290
Os.27120.1.S1_at--846--3451Chr08:184229..184253 (25 bp)
CAGTCTCGTTGTGTGCAGATGCAGG
LOC_Os08g01290
Os.27120.1.S1_at--901--1291Chr08:184245..184269 (25 bp)
AGATGCAGGTGCAGTTTGTTGTTGC
LOC_Os08g01290
Os.27120.1.S1_at--79--8731Chr08:184282..184306 (25 bp)
TGTCTGTTCTTCTTGTGTGGCAGAT
LOC_Os08g01290
Os.27120.1.S1_at--413--10571Chr08:184288..184312 (25 bp)
TTCTTCTTGTGTGGCAGATGTGAAC
LOC_Os08g01290
Os.27120.1.S1_at--73--5291Chr08:184316..184340 (25 bp)
GAATGGCAACACATCTCAAGTGCAG
LOC_Os08g01290
Os.27120.1.S1_at--524--9111Chr08:184346..184370 (25 bp)
TGCTGCTACTACATTTATATCATGT
LOC_Os08g01290
Os.27120.1.S1_at--1013--6131Chr08:184380..184404 (25 bp)
GAGGTTGGAAGTGGAACAACCCCAG
LOC_Os08g01290
Target Sequence 
AATCTTCACAGTTGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAACCATGCTTCGAGTTCTTNTTCGGCATCCGATCAT
GGCAAGGTGATCCTGCAGTTTGGTAAGGTTGGCAAGGACATGTTCACCATGGACTACCGGTACCCTCTNTCAGCATTCCA
GGCTTTCGCCATCTGTTTGACCAGCTTCGACACCAAGCTGGCTTGTGAATAACATACATCAGTACTATAAGTNNGTGTTT
NNGTATAGCGTGTCAGTGTGTGTGGATAGTATAAACATCAGTCAGTCTCGTTGTGTGCAGATGCAGGTGCAGTTTGTTGT
TGCTGTTGATTTAGTTGTCTGTTCTTCTTGTGTGGCAGATGTGAACAAAGAATGGCAACACATCTCAAGTGCAGTTGTTT
GCTGCTACTACATTTATATCATGTAAGTATTTGGAGGTTGGAAGTGGAACAACCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis