Browse Element(s) Details


Os.27120.1.S2_at

Description gb:AK120706.1
DB_XREF= gi:37990329
TID=Os.27120.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001B21, full insert sequence.
FL= gb:AK100078.1 gb:AK120706.1 gb:AK104486.1 gb:AK060879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0129011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27120.1.S2_at--891--4411Chr08:184956..184980 (25 bp)
GCCAGTTGGCAAGATCTCCAGATCT
LOC_Os08g01290
Os.27120.1.S2_at--341--9231Chr08:184972..184996 (25 bp)
TCCAGATCTCTAACCTCACTAGAAC
LOC_Os08g01290
Os.27120.1.S2_at--776--7051Chr08:185014..185038 (25 bp)
GTAATTGGGATCTCATTGTCTAAAC
LOC_Os08g01290
Os.27120.1.S2_at--897--6511Chr08:185060..185084 (25 bp)
GATATTTCACGCCATTGCTTTCAAC
LOC_Os08g01290
Os.27120.1.S2_at--1015--751Chr08:185137..185161 (25 bp)
ATGTCGAGGCCCATCTCAAGATCAT
LOC_Os08g01290
Os.27120.1.S2_at--567--9571Chr08:185197..185221 (25 bp)
TCTTCTGCTACATTGGAACGGCTGA
LOC_Os08g01290
Os.27120.1.S2_at--844--2571Chr08:185213..185237 (25 bp)
AACGGCTGATTCGTGGTGGTGCTAC
LOC_Os08g01290
Os.27120.1.S2_at--712--811Chr08:185241..185265 (25 bp)
ATGGTCCTCTTGAACAATTGCTCTC
LOC_Os08g01290
Os.27120.1.S2_at--256--3171Chr08:185256..185280 (25 bp)
AATTGCTCTCAGGTTGATCCTTGAA
LOC_Os08g01290
Os.27120.1.S2_at--520--9231Chr08:185273..185297 (25 bp)
TCCTTGAAGGCGCTCTTTTGGTGCA
LOC_Os08g01290
Os.27120.1.S2_at--244--1231Chr08:185312..185336 (25 bp)
AGTTGTTCATGCAACCACGGTCAAA
LOC_Os08g01290
Target Sequence 
GCCAGTTGGCAAGATCTCCAGATCTCTAACCTCACTAGAACTCTCAATCTTAGTTCTNGTAATTGGGATCTCATTGTCTA
AACCAGNTGANCAGTCAGCTNTGCGATATTTCACGCCATTGCTTTCAACTCCCAACTNTTCGTCACCCAGTTNATCTGAC
CGACNTTGTGAGNTCTTAAGGATGTCGAGGCCCATCTCAAGATCATCCNCGACTTTGGCTCGTGGACGNTGGGGTGTCTC
CTCTTCTGCTACATTGGAACGGCTGATTCGTGGTGGTGCTACCCCATGGTCCTCTTGAACAATTGCTCTCAGGTTGATCC
TTGAAGGCGCTCTTTTGGTGCAGAAGAATTCAGAACAGTTGTTCATGCAACCACGGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27120.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis