Browse Element(s) Details


Os.27136.1.S1_at

Description gb:AK058824.1
DB_XREF= gi:32968842
TID=Os.27136.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.27136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H02, full insert sequence.
FL= gb:AK058824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3966011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed
LOC_Os04g39650OsAffx.26391.1.S1_at11/114+23407634..23410685Leucine Rich Repeat family protein, expressed
LOC_Os04g39660Os.27136.1.S1_at11/114+23410961..23412867F-box domain containing protein, expressed
LOC_Os04g39670OsAffx.26392.1.S1_at11/114+23413318..23416172expressed protein
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27136.1.S1_at--835--2451Chr04:23411533..23411557 (25 bp)
AACAATGCCGTGTCGATGTATGCTG
LOC_Os04g39660
Os.27136.1.S1_at--551--7811Chr04:23411497..23411521 (25 bp)
GGTCTCAAGGGCAACTGTGTGTACT
LOC_Os04g39660
Os.27136.1.S1_at--885--9951Chr04:23411414..23411438 (25 bp)
TACGCCTTGCTATCCTTTGGTTGGT
LOC_Os04g39660
Os.27136.1.S1_at--454--591Chr04:23411386..23411410 (25 bp)
ATGCCAGGGCCTTTGCAAAGCACGA
LOC_Os04g39660
Os.27136.1.S1_at--407--3291Chr04:23411371..23411395 (25 bp)
CAAAGCACGATCTGCTGGTTCTTCT
LOC_Os04g39660
Os.27136.1.S1_at--295--5631Chr04:23411294..23411318 (25 bp)
GACACGATCAAGGTCCCGTGCGGAA
LOC_Os04g39660
Os.27136.1.S1_at--507--3011Chr04:23411247..23411271 (25 bp)
AATGCGTCGCCAGATTGCTTGGTGA
LOC_Os04g39660
Os.27136.1.S1_at--739--5731Chr04:23411134..23411158 (25 bp)
GAGCTGGTGTTTCAAAACTGCCCGT
LOC_Os04g39660
Os.27136.1.S1_at--373--1991Chr04:23411118..23411142 (25 bp)
ACTGCCCGTGTAGCCGATAGTTTAT
LOC_Os04g39660
Os.27136.1.S1_at--444--10391Chr04:23411067..23411091 (25 bp)
TTTTCTCTGTCTAGTTGTGCTTATG
LOC_Os04g39660
Os.27136.1.S1_at--491--2231Chr04:23411007..23411031 (25 bp)
ACAATCGCTGTCATCTTGTTGAGCT
LOC_Os04g39660
Target Sequence 
AACAATGCCGTGTCGATGTATGCTGAGGGTGTGCATGGTCTCAAGGGCAACTGTGTGTACTGGATTGGTGGGCGTGGTAG
GGATCAGGGCATGGTGTTCGACATGGAAACCGGGAGGTNTACGCCTTGCTATCCTTTGGTTGGTGGCATGCCAGGGCCTT
TGCAAAGCACGATCTGCTGGTTCTTCTTGAGTGATATAGTGAACGCCAGCAACAATAGTGGAGGAAGGAGAGTTTATCAG
ACACGATCAAGGTCCCGTGCGGAACGTGCACAGGATATGGAAGAGTAATGCGTCGCCAGATTGCTTGGTGACATAGTGGG
TTTCNCCGATCACGATGATAGAAGTTTGAGCTTATGTACCATAGCAAAAGTGTGATCTGAACGTGCATAAGTTGTGGCAG
AGCTGGTGTTTCAAAACTGCCCGTGTAGCCGATAGTTTATTGCGATTTGTTTGTTTTCCAAATCAATTTTCTCTGTCTAG
TTGTGCTTATGTAACTCGTATCATCCTTATATATTTGTGTAATGAAACAATCGCTGTCATCTTGTTGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis