Browse Element(s) Details


Os.27154.1.S1_at

Description gb:CB622750
DB_XREF= gi:29617738
DB_XREF=OSIIEa09O09.f
CLONE=OSIIEa09O09
TID=Os.27154.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27154 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47722 (A.thaliana) T47722 probable protein kinase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2852011/11ser-thr protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed
LOC_Os05g28510Os.3381.1.S1_a_at11/115+16615815..16620585Importin-beta N-terminal domain containing protein, expressed
LOC_Os05g28520Os.27154.1.S1_at11/115+16621099..16623986ser-thr protein kinase, putative, expressed
LOC_Os05g28530OsAffx.14862.1.S1_x_at11/115+16636776..16637522Glutaredoxin family protein
LOC_Os05g28540Os.20627.3.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28540OsAffx.1646.1.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_at2/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_x_at1/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28560OsAffx.10496.1.S1_at1/115+16646996..16649855retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27154.1.S1_at--282--8351Chr05:16621509..16621533 (25 bp)
GGCGGCTGCGGGACGTCATGGACCC
LOC_Os05g28520
Os.27154.1.S1_at--1085--911Chr05:16621281..16621305 (25 bp)
AGGCAGCCTGACCAGCGTGCCAGTA
LOC_Os05g28520
Os.27154.1.S1_at--255--5851Chr05:16621272..16621296 (25 bp)
GACCAGCGTGCCAGTATTTGTAACT
LOC_Os05g28520
Os.27154.1.S1_at--78--4431Chr05:16621263..16621287 (25 bp)
GCCAGTATTTGTAACTTTGCTCTTG
LOC_Os05g28520
Os.27154.1.S1_at--637--7051Chr05:16621253..16621277 (25 bp)
GTAACTTTGCTCTTGAAATGAACCT
LOC_Os05g28520
Os.27154.1.S1_at--757--10751Chr05:16621241..16621265 (25 bp)
TTGAAATGAACCTACTTTGCATCCA
LOC_Os05g28520
Os.27154.1.S1_at--1130--7931Chr05:16621189..16621213 (25 bp)
GGATTTCATATGTAGTGTGCGTGCA
LOC_Os05g28520
Os.27154.1.S1_at--490--751Chr05:16621180..16621204 (25 bp)
ATGTAGTGTGCGTGCAGATTCTTGT
LOC_Os05g28520
Os.27154.1.S1_at--94--4011Chr05:16621170..16621194 (25 bp)
CGTGCAGATTCTTGTGAGGTGTTTA
LOC_Os05g28520
Os.27154.1.S1_at--810--6551Chr05:16621164..16621188 (25 bp)
GATTCTTGTGAGGTGTTTAACGAGA
LOC_Os05g28520
Os.27154.1.S1_at--135--451Chr05:16621134..16621158 (25 bp)
ATGTAAAACCTTGTGTAGTTTCACA
LOC_Os05g28520
Target Sequence 
GGCGGCTGCGGGACGTCATGGACCCGGCGCTGCGGGGCGCCTTCCACGCCGAGACCGTCGACCGCCTGGACGCCGTCGTC
CGGTCCTGCGCCGACCGCGACCCGAGGCGGCGCCCCTCCATGGCCGACGTCGCGGCCCGGCTCAGGGAGATCACCGCCAT
GCCGCCCGACGCCGCCACCCCCAAGGTGTCGCCGCTCTGGTGGGCCGAGCTCGAGATCATCTCCACCGAGGCAGCCTGAC
CAGCGTGCCAGTATTTGTAACTTTGCTCTTGAAATGAACCTACTTTGCATCCATCTGTAAATATGACATGAACAATGAGG
GGATTTCATATGTAGTGTGCGTGCAGATTCTTGTGAGGTGTTTAACGAGATTGAAATGTAAAACCTTGTGTAGTTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis