Browse Element(s) Details


Os.27165.1.A1_at

Description gb:CB645013
DB_XREF= gi:29640004
DB_XREF=OSJNEb06H13.r
CLONE=OSJNEb06H13
TID=Os.27165.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27165 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3287011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32830NANA9+19576951..19580595Purple acid phosphatase, putative
LOC_Os09g32840Os.26943.1.S1_at11/119+19581079..19585800Metallophosphatase, putative, expressed
LOC_Os09g32850NANA9+19586671..19587460hypothetical protein
LOC_Os09g32860NANA9+19589136..19592181F-box domain containing protein, expressed
LOC_Os09g32870Os.27165.1.A1_at11/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32870OsAffx.27735.1.S1_at1/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32880NANA9+19598725..19600526hypothetical protein
LOC_Os09g32890NANA9+19608976..19609476hypothetical protein
LOC_Os09g32899NANA9+19610344..19611198NA
LOC_Os09g32910OsAffx.14216.1.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910Os.53165.1.S1_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910OsAffx.27325.2.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32920NANA9+19618356..19619770hypothetical protein
LOC_Os09g32930Os.49778.1.S1_at11/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.44431.2.S1_x_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.9810.1.S1_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27165.1.A1_at--123--2251Chr09:19596755..19596779 (25 bp)
AAATTCCTCCATCTCAAGTGTTTGA
LOC_Os09g32870
Os.27165.1.A1_at--424--6851Chr09:19596774..19596798 (25 bp)
GTTTGACTATCGATCTTGCTGAAGT
LOC_Os09g32870
Os.27165.1.A1_at--904--4751Chr09:19596791..19596815 (25 bp)
GCTGAAGTTTCCCATGCATATGATT
LOC_Os09g32870
Os.27165.1.A1_at--6--3611Chr09:19596853..19596877 (25 bp)
CTTGGAGACTTTACTTCTGGGTGTA
LOC_Os09g32870
Os.27165.1.A1_at--591--4891Chr09:19596944..19596968 (25 bp)
GCTTTTCATCTCCAGATACCAAAGG
LOC_Os09g32870
Os.27165.1.A1_at--355--8931Chr09:19596982..19597006 (25 bp)
TGACTCAATTTTTGGAGATTCCTCA
LOC_Os09g32870
Os.27165.1.A1_at--1012--5611Chr09:19597037..19597061 (25 bp)
GACAACCTCCAGAGTGTGGTGATCA
LOC_Os09g32870
Os.27165.1.A1_at--127--131Chr09:19597106..19597130 (25 bp)
ATTCTTGACTGTACAACGTCACTTG
LOC_Os09g32870
Os.27165.1.A1_at--419--1891Chr09:19597121..19597145 (25 bp)
ACGTCACTTGAGTACCTTACACTGG
LOC_Os09g32870
Os.27165.1.A1_at--455--2411Chr09:19597181..19597205 (25 bp)
AAACACAGCCAATGCTTTCCTATGG
LOC_Os09g32870
Os.27165.1.A1_at--303--851Chr09:19597202..19597226 (25 bp)
ATGGACAAGGCCATGATCCCTAAAG
LOC_Os09g32870
Target Sequence 
AAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCTCTCTAGTTTCTTT
TCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTAT
GGTAGTAACCATCAATTAAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTT
GGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTC
CGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTC
GTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27165.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis