Browse Element(s) Details


Os.27186.1.S1_at

Description gb:AK067664.1
DB_XREF= gi:32977682
TID=Os.27186.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117H24, full insert sequence.
FL= gb:AK067664.1 gb:AK104957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27186.1.S1_at--884--5491Chr11:16820907..16820931 (25 bp)
GAACACACTCCTCACAAGGAATCTG
LOC_Os11g29840
Os.27186.1.S1_at--63--7791Chr11:16821026..16821050 (25 bp)
GGTGCCGGAAGGACCATCCCATGAG
LOC_Os11g29840
Os.27186.1.S1_at--55--3211Chr11:16821069..16821093 (25 bp)
CAATGGCGCCTTCGGTGCATCGTCA
LOC_Os11g29840
Os.27186.1.S1_at--543--5891Chr11:16821126..16821150 (25 bp)
GAGCGGCCACTGGATCAAGACTGAT
LOC_Os11g29840
Os.27186.1.S1_at--1031--2751Chr11:16821142..16821382 (25 bp)
AAGACTGATGCCGACTACTTGGTGC
LOC_Os11g29840
Os.27186.1.S1_at--746--5691Chr11:16821374..16821394 (21 bp)
GACTACTTGGTGCTGGAATTATAAT
LOC_Os11g29840
Os.27186.1.S1_at--1094--6171Chr11:16821406..16821430 (25 bp)
GAGGAGCTATTTGTTTCATCAAGAA
LOC_Os11g29840
Os.27186.1.S1_at--119--671Chr11:16821462..16821486 (25 bp)
ATGAATATGTGCTTGCTGTTACAAT
LOC_Os11g29840
Os.27186.1.S1_at--739--7491Chr11:16821586..16821610 (25 bp)
GTGGTGTTTATATACATTGCTCTGT
LOC_Os11g29840
Os.27186.1.S1_at--486--6611Chr11:16821661..16821685 (25 bp)
GATTGGTGTTTATGAGCCTAGCTGA
LOC_Os11g29840
Os.27186.1.S1_at--977--5171Chr11:16821688..16821712 (25 bp)
GCAATATTGTGTGTGGGTCCACCCC
LOC_Os11g29840
Target Sequence 
GAACACACTCCTCACAAGGAATCTGACCAAGAAGAGCCGCAACCGCGGCGCCACCGATAATGGCGGTGGCGCCGTGGCCA
CCGGAGACCCCGACGGGCCTCTGGCCTCGCCGGTGCTCCGGTGCCGGAAGGACCATCCCATGAGGGGCTTCGGCTGCTGC
ACCAATGGCGCCTTCGGTGCATCGTCACCGGGAGGCAACGCCGAGATGAACGGCAACAAGAGCGGCCACTGGATCAAGAC
TGATGCCGACTACTTGGTGCTGGAATTATAATGGGGAAAAGAAGAGGAGCTATTTGTTTCATCAAGAATTAAAGCTTGAA
TAGTGAGCATCTCATATATATGAATATGTGCTTGCTGTTACAATATAATCTCTATCTGTTTGGTATAGAAGGGCTTGAAT
GTGCTGTATATGTCACTATATATTGGGGGGGAGAGGATTACTATGAGATCAACTCATAAGTGTGTGGTGTTTATATACAT
TGCTCTGTGAATGTATGACAGAGATCAGAACTTAATGTATTGTATGCTTTCTTGATGTGATTGGTGTTTATGAGCCTAGC
TGATGGCAATATTGTGTGTGGGTCCACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis