Browse Element(s) Details


Os.27207.1.S1_at

Description gb:AK101523.1
DB_XREF= gi:32986732
TID=Os.27207.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046O16, full insert sequence.
FL= gb:AK101523.1 gb:AK106430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2520010/11Chloride channel protein CLC-a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25200Os.27207.1.S1_at10/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25200Os.17327.1.S1_at5/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25210Os.2348.2.S1_x_at5/1112+14500672..14501760Microsomal signal peptidase 12 kDa subunit family protein
LOC_Os12g25220NANA12+14504401..14507051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25230OsAffx.7695.1.S1_at11/1112+14510876..14511691hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0010167biological_processresponse to nitrate
GO:0005622cellular_componentintracellular
GO:0005247molecular_functionvoltage-gated chloride channel activity
GO:0005253molecular_functionanion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27207.1.S1_at--423--951NONE
AGGACCCGAGATATCTCCAATTGTG
NONE
Os.27207.1.S1_at--110--7971Chr12:14485085..14485109 (25 bp)
GGATCTTGACAAGGCAGGACCTGAT
LOC_Os12g25200
Os.27207.1.S1_at--78--3871Chr12:14485065..14485089 (25 bp)
CTGATAGCACACAACATCCTCGGTG
LOC_Os12g25200
Os.27207.1.S1_at--717--4951Chr12:14485041..14485065 (25 bp)
GCATTTCCACACCTTGCAAGCAAGA
LOC_Os12g25200
Os.27207.1.S1_at--417--6071Chr12:14484986..14485010 (25 bp)
GAGTTAATCCATCTTTATTGTCTTG
LOC_Os12g25200
Os.27207.1.S1_at--487--8991Chr12:14484963..14484987 (25 bp)
TGAAGCCAAATATCAGAGTCACCTG
LOC_Os12g25200
Os.27207.1.S1_at--720--6091Chr12:14484948..14484972 (25 bp)
GAGTCACCTGCATATACAGCTTTTA
LOC_Os12g25200
Os.27207.1.S1_at--421--10371Chr12:14484898..14484922 (25 bp)
TTTTTTCAGTTATCCTCTTCTCTGT
LOC_Os12g25200
Os.27207.1.S1_at--809--7931Chr12:14484862..14484886 (25 bp)
GGATTATTATTTGCTGCTCTTCTGA
LOC_Os12g25200
Os.27207.1.S1_at--608--4771Chr12:14484850..14484874 (25 bp)
GCTGCTCTTCTGAGAGTGCTTGAAT
LOC_Os12g25200
Os.27207.1.S1_at--972--2311Chr12:14484776..14484800 (25 bp)
AAAGGGACACAACCATGATGCAATA
LOC_Os12g25200
Target Sequence 
AGGACCCGAGATATCTCCAATTGTGGGGATCTTGACAAGGCAGGACCTGATAGCACACAACATCCTCGGTGCATTTCCAC
ACCTTGCAAGCAAGAGGAAAACACATTGAGAGGAACCATTTTTGAGAGTTAATCCATCTTTATTGTCTTGAAGCCAAATA
TCAGAGTCACCTGCATATACAGCTTTTATGAGGCTTTGAGTTTTTTTTCTTTTTTTTTTCAGTTATCCTCTTCTCTGTAA
GTAGATTCAGGATTATTATTTGCTGCTCTTCTGAGAGTGCTTGAATAATTGCTGCCAATGTAAAATCACACATGTAACTA
TGCCAGATGTAATCAAAAGGGACACAACCATGATGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis