Browse Element(s) Details


Os.27218.1.A1_at

Description gb:CB649864
DB_XREF= gi:29644857
DB_XREF=OSJNEb14A16.f
CLONE=OSJNEb14A16
TID=Os.27218.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27218 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565601.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4994011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27218.1.A1_at--627--9331Chr05:28564514..28564538 (25 bp)
TCGCCGGAGGTTCAACAGCATCACG
LOC_Os05g49940
Os.27218.1.A1_at--947--8012Chr05:28564519..28564543 (25 bp)
GGAGGTTCAACAGCATCACGGCGGC
LOC_Os05g49940
Os.27218.1.A1_at--761--311Chr05:28564651..28564675 (25 bp)
ATACGAATGGTACGTGACACGATCG
LOC_Os05g49940
Os.27218.1.A1_at--925--5631Chr05:28564666..28564690 (25 bp)
GACACGATCGAGCATGGCATTTGTA
LOC_Os05g49940
Os.27218.1.A1_at--711--10011Chr05:28564706..28564730 (25 bp)
TAGATACCCCCAAATTAGTTTAGCA
LOC_Os05g49940
Os.27218.1.A1_at--172--6831Chr05:28564723..28564747 (25 bp)
GTTTAGCAAAATTAGCATAGCCTTG
LOC_Os05g49940
Os.27218.1.A1_at--429--4951Chr05:28564737..28564761 (25 bp)
GCATAGCCTTGTACTATACGACTAC
LOC_Os05g49940
Os.27218.1.A1_at--1122--3911Chr05:28564764..28564788 (25 bp)
CGGCCTTGTCATTTGTCGAGGAAGA
LOC_Os05g49940
Os.27218.1.A1_at--860--1411Chr05:28564827..28564851 (25 bp)
AGAAATAAATGTTCTTCCCACTTAT
LOC_Os05g49940
Os.27218.1.A1_at--939--6711Chr05:28564837..28564861 (25 bp)
GTTCTTCCCACTTATTAGTAGCCGG
LOC_Os05g49940
Os.27218.1.A1_at--454--4371Chr05:28564844..28564868 (25 bp)
CCACTTATTAGTAGCCGGGAAATGA
LOC_Os05g49940
Target Sequence 
TCGCCGGAGGTTCAACAGCATCACGGCGGCGGCGGCGGCGGAGAGCGCGCCGCCCCCCGCGTCGGCGTCGCCCGACGCCG
TGCTCCCGTTCTTGGCGCCGCGCTCCGGCATGGGCTGCTTCTCCCTCTAAACGNGACATACGAATGGTACGTGACACGAT
CGAGCATGGCATTTGTAAAGGGGAAGATTAATTAGATACCCCCAAATTAGTTTAGCAAAATTAGCATAGCCTTGTACTAT
ACGACTACTNCGGCCTTGTCATTTGTCGAGGAAGATGGTAGTATTGGNCTATTGGTTATTTATAGGTTNTAGAAGAAATA
AATGTTCTTCCCACTTATTAGTAGCCGGGAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27218.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis