Browse Element(s) Details


Os.27226.1.S1_at

Description gb:AK063170.1
DB_XREF= gi:32973188
TID=Os.27226.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G09, full insert sequence.
FL= gb:AK063170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2719010/11ICE-like protease p20 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27140NANA3+15515748..15521685retrotransposon protein, putative, unclassified
LOC_Os03g27150Os.28943.1.S1_x_at4/113+15522306..15525536retrotransposon protein, putative, unclassified
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27226.1.S1_at--438--9111Chr03:15547725..15547746 (22 bp)
TGCTGCTTCCTCAGCGTGCAGGAGC
LOC_Os03g27190
Os.27226.1.S1_at--756--5011Chr03:15547104..15547128 (25 bp)
GCAGGAGCCGCAGCTCTGTTCGTCG
LOC_Os03g27190
Os.27226.1.S1_at--377--6071Chr03:15547076..15547100 (25 bp)
GAGTTCAACGTCTACGAGGAGCAGT
LOC_Os03g27190
Os.27226.1.S1_at--658--8071Chr03:15547059..15547083 (25 bp)
GGAGCAGTTTATCCTGTGACCGACC
LOC_Os03g27190
Os.27226.1.S1_at--1074--3971Chr03:15547025..15547049 (25 bp)
CGGGCACAAGCTCCATTCAGATGAA
LOC_Os03g27190
Os.27226.1.S1_at--599--10531Chr03:15547010..15547034 (25 bp)
TTCAGATGAAAACCTCTGCTCCTCC
LOC_Os03g27190
Os.27226.1.S1_at--66--7951Chr03:15546961..15546985 (25 bp)
GGATATCATACACGTAGGCTCGCTT
LOC_Os03g27190
Os.27226.1.S1_at--1002--3331Chr03:15546951..15546975 (25 bp)
CACGTAGGCTCGCTTTCTTAAAATA
LOC_Os03g27190
Os.27226.1.S1_at--1113--231Chr03:15546825..15546849 (25 bp)
ATATATGTTGCTCTGTTGCTGCGGC
LOC_Os03g27190
Os.27226.1.S1_at--853--9991Chr03:15546740..15546764 (25 bp)
TAGCGCAGAGCGACGGATTGGAACT
LOC_Os03g27190
Os.27226.1.S1_at--144--8731Chr03:15546661..15546685 (25 bp)
TGTAAGTTTGTTAAGCTTCGGTCAC
NONE
Target Sequence 
TGCTGCTTCCTCAGCGTGCAGGAGCCGCAGCTCTGTTCGTCGNAGGAGTTCAACGTCTACGAGGAGCAGTTTATCCTGTG
ACCGACCGCATTGTCCCGGGCACAAGCTCCATTCAGATGAAAACCTCTGCTCCTCCAGCTCCNTTCTAANTGCGGATGCT
GGATATCATACACGTAGGCTCGCTTTCTTAAAATAAAATTTAAATATTATTGTTCGTAGAAAAGAGTATGATAGTGTGAT
ATCAAAATGTGGACGAGNAAAAAAACCGTGTTCTAAGTATCGNGTATTAGCGAAGGATATATGTTGCTCTGTTGCTGCGG
CCATGGCCATGCANGTGTGTTCTTACAAAAACTCAAGCGTGTGATCATATTTATAATAAGGTAGCGCAGAGCGACGGATT
GGAACTGAAATTGTGTAATTGAGCGTGTACTTTGTATTGTCCAAATCTGTTTTTATAATTTGTAAGTTTGTTAAGCTTCG
GTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis