Browse Element(s) Details


Os.27228.2.S1_at

Description gb:AK107400.1
DB_XREF= gi:32992609
TID=Os.27228.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D09, full insert sequence.
FL= gb:AK107400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0952011/11Hexose carrier protein HEX6, putative, expressed
LOC_Os10g270501/11Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009926biological_processauxin polar transport
GO:0015770biological_processsucrose transport
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27228.2.S1_at--436--10611Chr09:5139629..5139653 (25 bp)
TTCTGGTCTCGGCATAAGGCATTCC
LOC_Os09g09520
Os.27228.2.S1_at--811--10651Chr09:5139650..5139674 (25 bp)
TTCCCTCAACCATCCATTATTACAA
LOC_Os09g09520
Os.27228.2.S1_at--385--1411Chr09:5139674..5139698 (25 bp)
AAATTTTAACCATATGCTAGCCACA
LOC_Os09g09520
Os.27228.2.S1_at--578--2731Chr09:5139738..5139762 (25 bp)
AAGCACAAAGCCTATCATCGACCAC
LOC_Os09g09520
Os.27228.2.S1_at--6--1711Chr09:5139758..5139782 (25 bp)
ACCACCCACCGATGCTTGAATATAA
LOC_Os09g09520
Os.27228.2.S1_at--815--4251Chr09:5139809..5139833 (25 bp)
CCAACCACAACTCATTTACTACTTT
LOC_Os09g09520
Os.27228.2.S1_at--675--5597Chr12:6325785..6326006 (25 bp)
GAAATTTCACCTAATCCCTTTATAT
NONE
Os.27228.2.S1_at--36--3051Chr09:5139874..5139898 (25 bp)
AATCCCTTTATATCTTGAGTTTTGC
LOC_Os09g09520
Os.27228.2.S1_at--812--6071Chr09:5139890..5139914 (25 bp)
GAGTTTTGCTATTTCTCATGTATAG
LOC_Os09g09520
Os.27228.2.S1_at--409--1191Chr09:5139945..5139969 (25 bp)
AGTTTGACCGTTCAATTTCTATGGA
LOC_Os09g09520
Os.27228.2.S1_at--129--5571Chr09:5139968..5139992 (25 bp)
GAAAGGATCATTTTGCCCTTAGGTA
LOC_Os09g09520
Target Sequence 
TTCTGGTCTCGGCATAAGGCATTCCCTCAACCATCCATTATTACAAAATTTTAACCATATGCTAGCCACAAATACTATAT
ACTTAATTAAGCTTGAATGAAAACCACCTAAGCACAAAGCCTATCATCGACCACCCACCGATGCTTGAATATAAGCATTT
TTAAAGCACCGTTTACTCCACCAACCACAACTCATTTACTACTTTTTTAATAGAGAAATTTCATGTGTATACTGAAATTT
CACCTAATCCCTTTATATCTTGAGTTTTGCTATTTCTCATGTATAGCACCGAATTTTGGTTACCCTTTTTTTTGTTAGTT
TGACCGTTCAATTTCTATGGAAAGGATCATTTTGCCCTTAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27228.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis