Browse Element(s) Details


Os.27253.1.A1_at

Description gb:AK059320.1
DB_XREF= gi:32969338
TID=Os.27253.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H07, full insert sequence.
FL= gb:AK059320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g041207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04080Os.19099.1.S1_x_at2/118+1972270..1974459retrotransposon, putative, centromere-specific
LOC_Os08g04090Os.52271.1.S1_at11/118+1982002..1984474expressed protein
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27253.1.A1_at--529--9111Chr08:1994079..1994103 (25 bp)
TGCTGCGTTGTACCTGAAGATCGAT
LOC_Os08g04120
Os.27253.1.A1_at--1096--291Chr08:1994056..1994080 (25 bp)
ATAGCGCGAAAGATGACCACGGAGA
LOC_Os08g04120
Os.27253.1.A1_at--386--2791Chr08:1994015..1994039 (25 bp)
AAGAGGATCATCCAGTGCCAGCGTC
LOC_Os08g04120
Os.27253.1.A1_at--184--9211Chr08:1994000..1994024 (25 bp)
TGCCAGCGTCGCGAGGATCACGCAG
LOC_Os08g04120
Os.27253.1.A1_at--572--391Chr08:1993984..1994008 (25 bp)
ATCACGCAGGCGTTGAGCTACTGAT
LOC_Os08g04120
Os.27253.1.A1_at--718--4851Chr08:1993968..1993992 (25 bp)
GCTACTGATGGAGAGCTGCAAGGAT
LOC_Os08g04120
Os.27253.1.A1_at--416--391Chr08:1993853..1993877 (25 bp)
ATCAGCTCAGAGTCCAGCTTTGAGA
LOC_Os08g04120
Os.27253.1.A1_at--306--6491Chr08:1993800..1993824 (25 bp)
GATACGCATAGCATGATAGAGCAGC
NONE
Os.27253.1.A1_at--514--5031Chr08:1993777..1993801 (25 bp)
GCAGAGTAGTTTGATTTGTTCGCTA
NONE
Os.27253.1.A1_at--354--10051Chr08:1993727..1993751 (25 bp)
TAGTTTTGTATCTCGATGGTCCTGT
NONE
Os.27253.1.A1_at--378--9391Chr08:1993715..1993739 (25 bp)
TCGATGGTCCTGTTCCACATGAAAA
NONE
Target Sequence 
TGCTGCGTTGTACCTGAAGATCGATAGCGCGAAAGATGACCACGGAGAACAGNAANCACTGGTGAAGAGGATCATCCAGT
GCCAGCGTCGCGAGGATCACGCAGGCGTTGAGCTACTGATGGAGAGCTGCAAGGATNCGAGGGACCTGACAATCATGAAG
CCNGTGCANCTGAGGCTGATGCTGGANTGTGCCGATCATCCTGCTGGNACCACCAACAAGGANACCATCAGCTCAGAGTC
CAGCTTTGAGATAAACATCTCTTTAGATTAGTTTCCANNNNNNNATGATACGCATAGCATGATAGAGCAGCAGAGTAGTT
TGATTTGTTCGCTAGAGAGANAAATTCAACACTTTCAGATAGTTTTGTATCTCGATGGTCCTGTTCCACATGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27253.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis