Browse Element(s) Details


Os.27272.1.S1_at

Description gb:AK059924.1
DB_XREF= gi:32969942
TID=Os.27272.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-H09, full insert sequence.
FL= gb:AK059924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4310011/11PBS lyase HEAT-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43050NANA12+26702127..26708907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43060OsAffx.20100.2.S1_at11/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.2.S1_x_at10/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.1.S1_x_at5/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.3.S1_x_at4/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43070OsAffx.7875.1.S1_at11/1112+26718582..26718956hypothetical protein
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030089cellular_componentphycobilisome
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27272.1.S1_at--575--9091Chr12:26727237..26727261 (25 bp)
TGCTCTAGGCGTCAAAAGTGCTCTT
LOC_Os12g43100
Os.27272.1.S1_at--653--10571Chr12:26726772..26727238 (25 bp)
TTCTACGCCACGAGGTTGCTTATGT
LOC_Os12g43100
Os.27272.1.S1_at--1029--1291Chr12:26726717..26726741 (25 bp)
AGATGCACTTTCCACTGTCCTGAAG
LOC_Os12g43100
Os.27272.1.S1_at--674--2311Chr12:26726502..26726526 (25 bp)
AAAGGACCCTGAGCCAATAGTCTCC
LOC_Os12g43100
Os.27272.1.S1_at--613--3091Chr12:26726487..26726511 (25 bp)
AATAGTCTCCCAGAGCTGCGAAGTA
LOC_Os12g43100
Os.27272.1.S1_at--986--5331Chr12:26726468..26726492 (25 bp)
GAAGTAGCACTCAGCATGCTTGAAT
LOC_Os12g43100
Os.27272.1.S1_at--86--6211Chr12:26726243..26726267 (25 bp)
GAGGCAGGCTGGAATGTGTCTAATC
LOC_Os12g43100
Os.27272.1.S1_at--343--7431Chr12:26726228..26726252 (25 bp)
GTGTCTAATCCTGTAATCCAAACCT
LOC_Os12g43100
Os.27272.1.S1_at--721--3271Chr12:26726210..26726234 (25 bp)
CAAACCTTATACCAGTCTACCTTGA
LOC_Os12g43100
Os.27272.1.S1_at--773--6531Chr12:26726165..26726189 (25 bp)
GATTTACTGATCAATCTCTGGGCTC
LOC_Os12g43100
Os.27272.1.S1_at--1099--451Chr12:26726152..26726176 (25 bp)
ATCTCTGGGCTCTCATTCTAGGAAG
LOC_Os12g43100
Target Sequence 
TGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAG
ATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATT
GCAGATCAGGAAAGCATTGCACTTNTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGC
ACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCNGCAGACTCCTCAGGTGCAGCAGGAGT
CCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGNGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATAC
CAGTCTACCTTGAANTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis