Browse Element(s) Details


Os.27333.2.S1_x_at

Description gb:AK103566.1
DB_XREF= gi:32988775
TID=Os.27333.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132M03, full insert sequence.
FL= gb:AK103566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0946011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09420OsAffx.22492.1.S1_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420OsAffx.22492.1.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09420Os.6227.2.S1_x_at1/1111+5043424..5049074retrotransposon protein, putative, unclassified
LOC_Os11g09430Os.54089.1.S1_at10/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09430Os.54089.2.S1_at7/1111+5055794..5059764F-box domain containing protein, expressed
LOC_Os11g09440Os.51921.1.S1_at2/1111+5059817..5061237Histone deacetylase family protein
LOC_Os11g09450OsAffx.6125.1.S1_at10/1111+5062116..5063706hypothetical protein
LOC_Os11g09460Os.27333.2.S1_x_at11/1111+5068519..5070176expressed protein
LOC_Os11g09460Os.27333.3.S1_at11/1111+5068519..5070176expressed protein
LOC_Os11g09470Os.27333.1.S1_at7/1111+5071641..5072196hypothetical protein
LOC_Os11g09480NANA11+5075544..5077911F-box domain containing protein, expressed
LOC_Os11g09490Os.54744.1.S1_at3/1111+5081529..5083880F-box domain containing protein
LOC_Os11g09500NANA11+5086336..5088670F-box domain containing protein
LOC_Os11g09510OsAffx.18763.1.S1_at11/1111+5092787..5095348F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27333.2.S1_x_at--635--7371Chr11:5069973..5069997 (25 bp)
GTGACCGTAGCACATGCCTGAATGC
LOC_Os11g09460
Os.27333.2.S1_x_at--169--2271Chr11:5069939..5069963 (25 bp)
AAATCTCGGTGCGATCTGGAGCCAG
LOC_Os11g09460
Os.27333.2.S1_x_at--867--371Chr11:5069902..5069926 (25 bp)
ATCAACCTATGGATTCGTCATGCCC
LOC_Os11g09460
Os.27333.2.S1_x_at--105--611Chr11:5069883..5069907 (25 bp)
ATGCCCTTCTGTGCGAAACTCAAGC
LOC_Os11g09460
Os.27333.2.S1_x_at--309--2011Chr11:5069866..5069890 (25 bp)
ACTCAAGCTCTACAGGTTCATCTAA
LOC_Os11g09460
Os.27333.2.S1_x_at--896--8191Chr11:5069816..5069840 (25 bp)
GGAAGATGTGGCTCTTGTCTCCCAG
LOC_Os11g09460
Os.27333.2.S1_x_at--458--3131Chr11:5069740..5069764 (25 bp)
AATTTTTTGTGCTGCCCAGTACTGA
LOC_Os11g09460
Os.27333.2.S1_x_at--944--2431Chr11:5069677..5069701 (25 bp)
AAAATCTCATCCGAATCCCTGAAAC
LOC_Os11g09460
Os.27333.2.S1_x_at--843--2571Chr11:5069655..5069679 (25 bp)
AACGGCTGACTGCAGTTGACTGTTC
LOC_Os11g09460
Os.27333.2.S1_x_at--734--6731Chr11:5069634..5069658 (25 bp)
GTTCATTTTATTCATATCCCCGAGT
LOC_Os11g09460
Os.27333.2.S1_x_at--1083--6951Chr11:5069611..5069635 (25 bp)
GTACGAATTTTTCTCCCAAGTCTTG
LOC_Os11g09460
Target Sequence 
GTGACCGTAGCACATGCCTGAATGCGTGTGAGGTAAATCTCGGTGCGATCTGGAGCCAGGATGATCCATGTATCAACCTA
TGGATTCGTCATGCCCTTCTGTGCGAAACTCAAGCTCTACAGGTTCATCTAAGCATTGATAGCGACAGCTATGAACTGGA
AGATGTGGCTCTTGTCTCCCAGCATTTGATGAGGTTGGACCTTTGCAGTGTGGTGCTAAAAGACTACTTTCTCAATTTTT
TGTGCTGCCCAGTACTGAAGGAGCTATTGATGAGGAAGTGCTGTATTAAAGCTCGCAAAATCTCATCCGAATCCCTGAAA
CGGCTGACTGCAGTTGACTGTTCATTTTATTCATATCCCCGAGTACGAATTTTTCTCCCAAGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27333.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis