Browse Element(s) Details


Os.27339.1.S1_at

Description gb:AK063761.1
DB_XREF= gi:32973779
TID=Os.27339.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.27339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A12, full insert sequence.
FL= gb:AK063761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0154011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g653501/11deoxynucleoside kinase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0005524molecular_functionATP binding
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27339.1.S1_at--219--8191Chr05:298129..298153 (25 bp)
GGAAGAAGTGCCTCTAGCTACAGCC
LOC_Os05g01540
Os.27339.1.S1_at--82--9311Chr05:298174..298198 (25 bp)
TCCCCTATCCGCAATTAAAACTCTT
LOC_Os05g01540
Os.27339.1.S1_at--402--7652Chr05:298237..298261 (25 bp)
TGGTAGGTAAATCTTTCCGTCTCGT
LOC_Os05g01540
Os.27339.1.S1_at--200--9511Chr05:298256..298280 (25 bp)
TCTCGTCCCTTTTTATCGCTGATTT
LOC_Os05g01540
Os.27339.1.S1_at--438--10251Chr05:298279..298303 (25 bp)
TTTGTGTCTTTTTGTCTTTGCTGCT
LOC_Os05g01540
Os.27339.1.S1_at--160--7091Chr05:298316..298340 (25 bp)
GTCAAGCTTTGGTTCTTCGTGTGAG
LOC_Os05g01540
Os.27339.1.S1_at--414--4631Chr05:298354..298378 (25 bp)
GCGATGGTGCATGCGTTCCCTACGA
LOC_Os05g01540
Os.27339.1.S1_at--392--10651Chr05:298369..298393 (25 bp)
TTCCCTACGATCAAGCTGGCACTGG
LOC_Os05g01540
Os.27339.1.S1_at--470--9471Chr05:298443..298467 (25 bp)
TCTGTCTGAACTCTGGATTTCTCCT
LOC_Os05g01540
Os.27339.1.S1_at--1051--7591Chr05:298570..298594 (25 bp)
GGGAATCCAGGAGCACCAACATTTA
LOC_Os05g01540
Os.27339.1.S1_at--909--10731Chr05:298604..298628 (25 bp)
TTGAATTCACCACTCACTTGTCGAA
LOC_Os05g01540
Target Sequence 
GGAAGAAGTGCCTCTAGCTACAGCCGTAGTAGCAGCAGCTCAGGTTCCCCTATCCGCAATTAAAACTCTTGGCATGGCAT
GGCATGGAATGGAATGGTGTGGTGATCCTGGTAGGTAAATCTTTCCGTCTCGTCCCTTTTTATCGCTGATTTTGTGTCTT
TTTGTCTTTGCTGCTGCTGTTTTTGTTGTCAAGCTTTGGTTCTTCGTGTGAGTTTGGGGCTTTGCGCGATGGTGCATGCG
TTCCCTACGATCAAGCTGGCACTGGAACATTTAGATATTGCTGGAAGTTAAACATTTTCAAGCTTCTTGGAGGCTCTGTC
TGAACTCTGGATTTCTCCTCTTGGAGGGAGCGATGACTTATGCATGTCAATGCTGCAGTAAATAAAGTGGAGTACATTAG
TATTCTGTAGTAGCCTATTAAAGCACAGATTTCTGTGGGTTGGGAATCCAGGAGCACCAACATTTACTGGTGAAATTGAA
TTCACCACTCACTTGTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis