Browse Element(s) Details


Os.27353.1.S1_at

Description gb:AK070199.1
DB_XREF= gi:32980223
TID=Os.27353.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041A15, full insert sequence.
FL= gb:AK070199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5346011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein
LOC_Os04g53480Os.35344.18.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480Os.35344.3.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480OsAffx.22940.5.S1_x_at3/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53490Os.33308.1.S1_at11/114+31629431..31631806expressed protein
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27353.1.S1_at--190--8191Chr04:31613266..31613363 (25 bp)
GGAACCACCGGAAAGCACAGAACAA
LOC_Os04g53460
Os.27353.1.S1_at--127--8171Chr04:31612728..31612752 (25 bp)
GGAACTGCACCTCCGGTAGAGGCTT
LOC_Os04g53460
Os.27353.1.S1_at--370--851Chr04:31612709..31612733 (25 bp)
AGGCTTCAACCGCAGTACATAATCC
LOC_Os04g53460
Os.27353.1.S1_at--816--351Chr04:31612595..31612715 (25 bp)
ATAATCCCCAAGATGACAGTCATGA
LOC_Os04g53460
Os.27353.1.S1_at--411--51Chr04:31612489..31612513 (25 bp)
ATTGTTTCTGCCAAGTCTTACTATA
LOC_Os04g53460
Os.27353.1.S1_at--153--7151Chr04:31612475..31612499 (25 bp)
GTCTTACTATAAATGGCTGGATGCC
LOC_Os04g53460
Os.27353.1.S1_at--494--8371Chr04:31612447..31612471 (25 bp)
GGCGTAGACTCGTACTCTAGGATAT
LOC_Os04g53460
Os.27353.1.S1_at--169--10811Chr04:31612418..31612442 (25 bp)
TTGTCTTTCGCTTTTATTTGTCTTC
LOC_Os04g53460
Os.27353.1.S1_at--752--431Chr04:31612373..31612397 (25 bp)
ATCTTTCATTTTCATTCGTCTTCCA
LOC_Os04g53460
Os.27353.1.S1_at--843--2511Chr04:31612263..31612287 (25 bp)
AACTTGGAAGGACTAGGCCCCATAT
LOC_Os04g53460
Os.27353.1.S1_at--742--2711Chr04:31612214..31612238 (25 bp)
AAGCATTTGTACCATGGCCCTTGTG
LOC_Os04g53460
Target Sequence 
GGAACCACCGGAAAGCACAGAACAAGCTGTGCAGCTGGACACAGAGAGAGACATTTCCAAAGGAGCTGATGACTCAAAGT
CAGAAGCCTCAGGAGGAACTGCACCTCCGGTAGAGGCTTCAACCGCAGTACATAATCCCCAAGATGACAGTCATGAAATG
AAGGTTGACAACAAATGAAAGCAGCGCTTGAGAAAGACAAAATGATTCTTAATGTTAGGTGAAAGCTTCAAATCCAGATT
GTTTCTGCCAAGTCTTACTATAAATGGCTGGATGCCAAAGGCGTAGACTCGTACTCTAGGATATATACTTGTCTTTCGCT
TTTATTTGTCTTCCTTATAAGGATACTTGAGCTATCTTTCATTTTCATTCGTCTTCCATTTAAGGATACTTGAACCTTTT
AATAATGATGTAAAGCCATACAAAAAAGTTACTTCATACTTGGAACAAAAAGAAATGAGAAAAAACTTGGAAGGACTAGG
CCCCATATAGGAAAATGGCATATCTGAATCGAAAGCATTTGTACCATGGCCCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis