Browse Element(s) Details


Os.27354.1.S1_at

Description gb:AK067189.1
DB_XREF= gi:32977207
TID=Os.27354.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.27354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096A09, full insert sequence.
FL= gb:AK062085.1 gb:AK067189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1760011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27354.1.S1_at--196--10311Chr09:10766590..10766699 (25 bp)
TTTCTCTAGGTGGAGTTGGCATCTC
LOC_Os09g17600
Os.27354.1.S1_at--698--6611Chr09:10766689..10766713 (25 bp)
GTTGGCATCTCAAACATGATTCATA
LOC_Os09g17600
Os.27354.1.S1_at--584--251Chr09:10766757..10766781 (25 bp)
ATATGATGCGTAGGAAGCCATGCGT
LOC_Os09g17600
Os.27354.1.S1_at--768--1731Chr09:10766815..10766839 (25 bp)
ACCATAATCCATTTCTCTATCAGCA
LOC_Os09g17600
Os.27354.1.S1_at--845--5911Chr09:10766857..10766881 (25 bp)
GAGCATTTCAAGATTTGGTTTTCCA
LOC_Os09g17600
Os.27354.1.S1_at--1102--7871Chr09:10766873..10766897 (25 bp)
GGTTTTCCAATCATGTGACCAGAGA
LOC_Os09g17600
Os.27354.1.S1_at--449--1211Chr09:10766990..10767014 (25 bp)
AGTTTAAGCCAGTACAGCATGTATC
LOC_Os09g17600
Os.27354.1.S1_at--1134--10791Chr09:10767026..10767050 (25 bp)
TTGTATGAATCTTCCTGACTCAGGT
LOC_Os09g17600
Os.27354.1.S1_at--1147--6051Chr09:10767052..10767076 (25 bp)
GAGTTCTGCCAGAGATTGCATCATC
LOC_Os09g17600
Os.27354.1.S1_at--727--1251Chr09:10767064..10767088 (25 bp)
AGATTGCATCATCCTAGTCTCCTAG
LOC_Os09g17600
Os.27354.1.S1_at--534--1151Chr09:10767079..10767103 (25 bp)
AGTCTCCTAGATGGGCATTTTGCTG
LOC_Os09g17600
Target Sequence 
TTTCTCTAGGTGGAGTTGGCATCTCAAACATGATTCATANGATCAACCAACATGAGTACATGGGGTTTGAGAACCTTTGC
AAATATGATGCGTAGGAAGCCATGCGTAAAAAGCAAGCAGGCTTAGAAGAAGTTAATAATACCATAATCCATTTCTCTAT
CAGCATCAGAACCATGTGGAAGGAGCATTTCAAGATTTGGTTTTCCAATCATGTGACCAGAGAGAATTTGGNTCGTGCAA
CAGCTTGGAGGGGAAAACTGCATGGATTAGAATTCAGATCAATTTTGGAGCACAAATATACTGTTTTCTAGTCTTTAGTT
TAAGCCAGTACAGCATGTATCACATATTCACATTGTATGAATCTTCCTGACTCAGGTAGAGTTCTGCCAGAGATTGCATC
ATCCTAGTCTCCTAGATGGGCATTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis