Browse Element(s) Details


Os.50548.3.S1_at

Description gb:AK121772.1
DB_XREF= gi:37991395
TID=Os.50548.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092J09, full insert sequence.
FL= gb:AK121772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1762011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50548.3.S1_at--209--2751Chr09:10769786..10769809 (24 bp)
AAGAAATCTGGGATGCCCTGCGTGT
LOC_Os09g17620
Os.50548.3.S1_at--1047--1311Chr09:10769755..10769779 (25 bp)
AGAGTCTGAAGTGTCCCTTGCACAG
LOC_Os09g17620
Os.50548.3.S1_at--27--331Chr09:10769696..10769720 (25 bp)
ATACTGATCTGACTCTCTGCTATGA
LOC_Os09g17620
Os.50548.3.S1_at--1037--8891Chr09:10769487..10769511 (25 bp)
TGAGAACAACCCCTTGAGTGTCCTG
LOC_Os09g17620
Os.50548.3.S1_at--308--7451Chr09:10769470..10769494 (25 bp)
GTGTCCTGGTAGTTGAAGCATGCTT
LOC_Os09g17620
Os.50548.3.S1_at--1075--4971Chr09:10769430..10769454 (25 bp)
GCATGTTCTGGGTAACTGTCAGCTT
LOC_Os09g17620
Os.50548.3.S1_at--1000--10431Chr09:10769387..10769411 (25 bp)
TTAGGACACAGTTCTCTTCCATCTT
LOC_Os09g17620
Os.50548.3.S1_at--1086--2311Chr09:10769339..10769363 (25 bp)
AAAGTCTTTACAATATCCCCTGCTG
LOC_Os09g17620
Os.50548.3.S1_at--162--9111Chr09:10769319..10769343 (25 bp)
TGCTGCTGGTGCTACCTTAAACATG
LOC_Os09g17620
Os.50548.3.S1_at--113--271Chr09:10769184..10769208 (25 bp)
ATATGGCACATCTCGCACAATTAGT
LOC_Os09g17620
Os.50548.3.S1_at--209--9111Chr09:10769157..10769181 (25 bp)
TGCTGCCTTACCTCTAATGCATATG
LOC_Os09g17620
Target Sequence 
AAGAAATCTGGGATGCCCTGCGTGTTGCGGCAGAGTCTGAAGTGTCCCTTGCACAGGCAATTGTGGAAAGTGCAGCCATA
ATTGTTTCTAATACTGATCTGACTCTCTGCTATGATGAAAGAGGTGCGAAGTATGAACTGCCCAAGTATGTCTTGAGTGA
ACCAACCAACCTGATTCAAGACAGCTGAAGAGCAGACCTACTGATGTAAACAACTGTAAATGAGAACAACCCCTTGAGTG
TCCTGGTAGTTGAAGCATGCTTGATAAAAGATTTTAAGCATGTTCTGGGTAACTGTCAGCTTACATTTTGTCTCTTCTTG
TTAGGACACAGTTCTCTTCCATCTTGGCCGTTGTCCTCCACCTTAGATAAAGTCTTTACAATATCCCCTGCTGCTGGTGC
TACCTTAAACATGGTCTGCTTAGAAATCTTTTATATGAGTTAAAAATCTTAGAATGGTTCTTAGATATTTCATTATCATG
ATACAAGTTGGAGTAAGATTACAGTATGTGTTTCAGAAGAAATATATGGCACATCTCGCACAATTAGTTTTGCTGCCTTA
CCTCTAATGCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50548.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis