Browse Element(s) Details


OsAffx.6316.1.S1_x_at

Description tigr:9637.m01501
TID=OsAffx.6316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1758011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17530Os.57392.1.S1_at2/119+10731282..10732352F-box domain containing protein
LOC_Os09g17540Os.54347.1.S1_at11/119+10732801..10734332F-box domain containing protein, expressed
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6316.1.S1_x_at--716--7971Chr09:10750785..10750809 (25 bp)
GGATGCGTGGAAGACTCGGGCCCGA
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--355--6251Chr09:10750786..10750810 (25 bp)
GATGCGTGGAAGACTCGGGCCCGAC
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--845--8671Chr09:10750788..10750812 (25 bp)
TGCGTGGAAGACTCGGGCCCGACGT
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--850--7611Chr09:10750816..10750840 (25 bp)
GGGACATCCCGGATGCCCTCGTCGG
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--537--8111Chr09:10750817..10750841 (25 bp)
GGACATCCCGGATGCCCTCGTCGGG
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--482--7571Chr09:10750976..10751000 (25 bp)
GGGCGAGAAGCTTGGTTCTGACAAT
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--290--1551Chr09:10750984..10751008 (25 bp)
AGCTTGGTTCTGACAATGGCTGCGT
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--929--8571Chr09:10750988..10751012 (25 bp)
TGGTTCTGACAATGGCTGCGTCGAG
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--635--7951Chr09:10751014..10751038 (25 bp)
GGATCCGGGAAGGAATCGCTGATTC
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--191--531Chr09:10751028..10751052 (25 bp)
ATCGCTGATTCGGATCGCGGAGAAG
LOC_Os09g17580
OsAffx.6316.1.S1_x_at--579--9331Chr09:10751029..10751053 (25 bp)
TCGCTGATTCGGATCGCGGAGAAGG
LOC_Os09g17580
Target Sequence 
GGATGCGTGGAAGACTCGGGCCCGACGTGCGGGGACATCCCGGATGCCCTCGTCGGGGTGGGAGGCGACCGCGGGAGCGG
CGCCGACGAGGTCGTGGTGGTCGGCGGCGGAGCCGGTGAGGGCGGAGACGAGGTGGTCGTCGGAGGGCGCGGGGACGAGG
AGGATAGGGTTGTGGTGGTCGGGGAGGAGCGGGGCGAGAAGCTTGGTTCTGACAATGGCTGCGTCGAGGGGATCCGGGAA
GGAATCGCTGATTCGGATCGCGGAGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6316.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis