Browse Element(s) Details


Os.27361.1.S1_at

Description gb:AK060716.1
DB_XREF= gi:32970734
TID=Os.27361.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D11, full insert sequence.
FL= gb:AK060716.1 gb:AK058814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3285011/11Propionyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32800OsAffx.13097.1.S1_s_at11/118+20197212..20202694transposon protein, putative, Mutator sub-class
LOC_Os08g32800Os.46613.1.S2_at4/118+20197212..20202694transposon protein, putative, Mutator sub-class
LOC_Os08g32810OsAffx.25936.1.S1_s_at9/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.7.S1_s_at8/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.2.S1_x_at5/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.5.S1_x_at2/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32820OsAffx.28545.4.S1_s_at11/118+20209716..20210741hypothetical protein
LOC_Os08g32830Os.10827.1.S1_x_at10/118+20210880..20214167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32830Os.46055.2.S1_x_at6/118+20210880..20214167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32840OsAffx.6009.1.S1_at10/118+20218263..20220785Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g32850Os.27361.1.S1_at11/118+20226720..20233601Propionyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
LOC_Os08g32860NANA8+20239247..20239629hypothetical protein
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006552biological_processleucine catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004075molecular_functionbiotin carboxylase activity
GO:0004485molecular_functionmethylcrotonoyl-CoA carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27361.1.S1_at--930--6811Chr08:20228628..20228652 (25 bp)
GTTTATGTGGCCAACTGCTAGGATA
LOC_Os08g32850
Os.27361.1.S1_at--327--3691Chr08:20228611..20228635 (25 bp)
CTAGGATATCTGTCATGGGTGGCAT
LOC_Os08g32850
Os.27361.1.S1_at--285--5071Chr08:20227357..20227381 (25 bp)
GCAGCTGGTGTCCTTGCTCAAATAG
LOC_Os08g32850
Os.27361.1.S1_at--839--10491Chr08:20227059..20227083 (25 bp)
TTAAGCCTCTGCTTATCTGCTGCGG
LOC_Os08g32850
Os.27361.1.S1_at--980--8231Chr08:20227036..20227060 (25 bp)
GGCAAAGCCGGTTCCAGAAGACACA
LOC_Os08g32850
Os.27361.1.S1_at--994--7431Chr08:20226971..20226995 (25 bp)
GTGTACAAATCCCTGTATACTGTAT
LOC_Os08g32850
Os.27361.1.S1_at--269--2271Chr08:20226905..20226929 (25 bp)
AAATGCCATTCCAAGGCTTATTTCG
LOC_Os08g32850
Os.27361.1.S1_at--857--191Chr08:20226886..20226910 (25 bp)
ATTTCGCAAGTATAATTTCGCCCTG
LOC_Os08g32850
Os.27361.1.S1_at--224--3131Chr08:20226873..20226897 (25 bp)
AATTTCGCCCTGATGTGTATAACAA
LOC_Os08g32850
Os.27361.1.S1_at--852--6491Chr08:20226781..20226805 (25 bp)
GATAGACTATTGTTCTGAGTCCACA
LOC_Os08g32850
Os.27361.1.S1_at--474--9471Chr08:20226768..20226792 (25 bp)
TCTGAGTCCACAATCCGTCAATGTA
LOC_Os08g32850
Target Sequence 
GTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACA
NCAGAAAAAGACAAGGAGTGGAGTGGACCAAAGATGAGGAAGAAGCCTTCAAAGCAAAAGTTGTGGAGGCTTATGACAAA
GAAGGAAGCCCATACTACTCCACCGCTAGACTTTGGGACGATGGGATTATAGATCCTGCGGACACCAGACGGGTTTTAAG
CCTCTGCTTATCTGCTGCGGCAAAGCCGGTTCCAGAAGACACAAAATATGGAGTATTTCGAATGTAAATCATGCATTATA
ATTGTGTACAAATCCCTGTATACTGTATAGTAAAATCCGCTTTCATGCGCATTGAAATAAGGCAAAATAAAATGCCATTC
CAAGGCTTATTTCGCAAGTATAATTTCGCCCTGATGTGTATAACAAAGTTATGTTTACCAGTGTTTTAGTGGCGAATAAA
CTGTTTAAGTTGTTACTGTAGCTAAAATACATTGATAGACTATTGTTCTGAGTCCACAATCCGTCAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis