Browse Element(s) Details


Os.27407.1.A1_at

Description gb:CB657101
DB_XREF= gi:29660826
DB_XREF=OSJNEc12D01.r
CLONE=OSJNEc12D01
TID=Os.27407.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27407 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g622006/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27407.1.A1_at--852--6771Chr01:36329821..36329845 (25 bp)
GTTATCATCATATCTGCTGCTGCAC
LOC_Os01g62200
Os.27407.1.A1_at--579--8391Chr01:36329796..36329820 (25 bp)
GGCGCTCGCCGTTGCTTAAAAAGAA
LOC_Os01g62200
Os.27407.1.A1_at--594--2711Chr01:36329776..36329800 (25 bp)
AAGAACCCAATACTACTAGCCAGGC
LOC_Os01g62200
Os.27407.1.A1_at--183--4431Chr01:36329758..36329782 (25 bp)
GCCAGGCTAGCCTGCCTCTGTGTGG
LOC_Os01g62200
Os.27407.1.A1_at--479--3771Chr01:36329743..36329767 (25 bp)
CTCTGTGTGGCGTCATGGAGTACGA
LOC_Os01g62200
Os.27407.1.A1_at--910--10111Chr01:36329690..36329714 (25 bp)
TATGATGGTATGCTATCTCTGCCTC
LOC_Os01g62200
Os.27407.1.A1_at--37--10611Chr01:36329398..36329422 (25 bp)
TTCTGTATATGCCTCTAGTGACTAG
NONE
Os.27407.1.A1_at--532--10111Chr01:36329391..36329415 (25 bp)
TATGCCTCTAGTGACTAGCCTCTGA
NONE
Os.27407.1.A1_at--702--9991Chr01:36329376..36329400 (25 bp)
TAGCCTCTGACCACTGTCTGGTGTC
NONE
Os.27407.1.A1_at--957--3331Chr01:36329365..36329389 (25 bp)
CACTGTCTGGTGTCTTGGGTTATAT
NONE
Os.27407.1.A1_at--1091--5471Chr01:36329302..36329326 (25 bp)
GAACTATTTCTGGAGAGTGTGCAAG
NONE
Target Sequence 
GTTATCATCATATCTGCTGCTGCACGGCGCTCGCCGTTGCTTAAAAAGAACCCAATACTACTAGCCAGGCTAGCCTGCCT
CTGTGTGGCGTCATGGAGTACGATGAGAATATGATGATGATGAGTTGGTGATATGATGGTATGCTATCTCTGCCTCGCGG
CATGGCAGGGTGCAGAAGGTGGAGCCGTCGACGGAGGCCGTGGACATGCACGACAGATGCATCCCGCGGAGGCCCAGGGG
CAAGAAGGACGGCGGCGCCTACCTCATCTCCGGCGGGAACGGGCAGTACGGGAGCAAAAGGCACGGGGGATGAGGAGTTT
GGGCTTGGGTTCAGGCTTGCGCCGGTGTGGTGATCTCATACTACCTATTGTACGGGATGATAATTCCGAAATTGATACTC
CTATATGTTAGCCATTAATTATGTTCTGTATATGCCTCTAGTGACTAGCCTCTGACCACTGTCTGGTGTCTTGGGTTATA
TCANTTTCTGGAGAATGAATGCATCATTTATGTACTAAAGAACTATTTCTGGAGAGTGTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27407.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis