Browse Element(s) Details


Os.27415.1.S1_at

Description gb:AK065026.1
DB_XREF= gi:32975044
TID=Os.27415.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G11, full insert sequence.
FL= gb:AK065026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0829011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein
LOC_Os07g08270OsAffx.28341.1.S1_at11/117+4218235..4220121hypothetical protein
LOC_Os07g08290Os.27415.1.S1_at11/117+4225000..4228382expressed protein
LOC_Os07g08300NANA7+4238383..4245863retrotransposon protein, putative, unclassified, expressed
LOC_Os07g08310OsAffx.22176.1.S1_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08310OsAffx.22176.1.S1_x_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08320OsAffx.16154.1.S1_at11/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08320Os.24190.1.A1_at7/117+4252196..4257655RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27415.1.S1_at--790--791Chr07:4225508..4225532 (25 bp)
ATGTGGCTGCGGTTCCTCATCTTCG
LOC_Os07g08290
Os.27415.1.S1_at--1122--3451Chr07:4225476..4225500 (25 bp)
CAGGTCCAATGGTAAGGTGCACGCG
LOC_Os07g08290
Os.27415.1.S1_at--103--5311Chr07:4225369..4225393 (25 bp)
GAAGGGTCCGGCTGACGTCCACCAT
LOC_Os07g08290
Os.27415.1.S1_at--836--10151Chr07:4225345..4225369 (25 bp)
TATCGTCCATTTCGTCTGCTGATTC
LOC_Os07g08290
Os.27415.1.S1_at--96--5391Chr07:4225295..4225319 (25 bp)
GAAGCATATGCGTTCTTTTTCAACT
LOC_Os07g08290
Os.27415.1.S1_at--1110--6851Chr07:4225220..4225244 (25 bp)
GTTTGTTGTTCCCTACATCTTTATA
LOC_Os07g08290
Os.27415.1.S1_at--67--2651Chr07:4225159..4225183 (25 bp)
AACCAGCAATCTTCCTGTGATAAGA
LOC_Os07g08290
Os.27415.1.S1_at--930--8331Chr07:4225124..4225148 (25 bp)
GGCTGATATGATTTGGGCTTTCTAT
LOC_Os07g08290
Os.27415.1.S1_at--458--10571Chr07:4225105..4225129 (25 bp)
TTCTATAGCTGCCAGCCCCTATATA
LOC_Os07g08290
Os.27415.1.S1_at--232--9251Chr07:4225062..4225086 (25 bp)
TCCTTTTCTCTTGACTGTAACCGTA
LOC_Os07g08290
Os.27415.1.S1_at--245--1791Chr07:4225043..4225067 (25 bp)
ACCGTATCTGTGTAATACTTCGCCA
LOC_Os07g08290
Target Sequence 
ATGTGGCTGCGGTTCCTCATCTTCGCCGCCGGCAGGTCCAATGGTAAGGTGCACGCGGCGGAGCTGGCCAGCGGAGGGGA
GCTCATCACCTTCGCCTGGCTGCTCATGGCCCGGGAAGGGCTCGGCGAATCCGAGAGGAGAAGGGTCCGGCTGACGTCCA
CCATATCGTCCATTTCGTCTGCTGATTCTGCTGGTGCTGCAGCTGATTTGAAGGAAGCATATGCGTTCTTTTTCAACTGA
TTAAAGTTTGAAAGTTTGATTAGTACTTTAGCTGATTTGAGTAGCTTTGTTTGTTGTTCCCTACATCTTTATAATCTAAA
GCTATGTATGAAGTAGAGTTAGGATTAATAACCAGCAATCTTCCTGTGATAAGAGATAATGCATGGCTGATATGATTTGG
GCTTTCTATAGCTGCCAGCCCCTATATATATCCCNAGATTTTCTCCTTCCTTTTCTCTTGACTGTAACCGTATCTGTGTA
ATACTTCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis