Browse Element(s) Details


Os.27482.1.A1_at

Description gb:AK110584.1
DB_XREF= gi:32995793
TID=Os.27482.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E12, full insert sequence.
FL= gb:AK110584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4430011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os08g433341/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44270OsAffx.4611.1.S1_s_at11/115+25677229..25678236VQ motif family protein, expressed
LOC_Os05g44280OsAffx.22608.3.S1_x_at4/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44280OsAffx.22608.3.S1_at3/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44290Os.12105.1.S1_a_at11/115+25688604..25692722protein kinase, putative, expressed
LOC_Os05g44300Os.27482.1.A1_at11/115+25693271..25695387uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27482.1.A1_at--852--3311Chr05:25693761..25693785 (25 bp)
CACATGGCGCCCTGGAGGAAGCAGC
LOC_Os05g44300
Os.27482.1.A1_at--549--831Chr05:25693731..25693755 (25 bp)
ATGGAGGCCAAGTGGCTCGCCACGC
LOC_Os05g44300
Os.27482.1.A1_at--1026--671Chr05:25693620..25693644 (25 bp)
ATGACGAACAGGCAGATGCAGCCCA
LOC_Os05g44300
Os.27482.1.A1_at--109--2492Chr08:27257276..27257357 (24 bp)
AACAGGCAGATGCAGCCCAAGTTCA
LOC_Os08g43334
Os.27482.1.A1_at--716--3431Chr05:25693608..25693632 (25 bp)
CAGATGCAGCCCAAGTTCAGGGCGT
LOC_Os05g44300
Os.27482.1.A1_at--440--6151Chr05:25693545..25693569 (25 bp)
GAGGTCGTGTGAGCTAGCGATCGAT
LOC_Os05g44300
Os.27482.1.A1_at--233--10371Chr05:25693473..25693497 (25 bp)
TTTTTTGGTATGTGCACGCGTGGTT
LOC_Os05g44300
Os.27482.1.A1_at--616--771Chr05:25693464..25693488 (25 bp)
ATGTGCACGCGTGGTTTTGACCTTG
LOC_Os05g44300
Os.27482.1.A1_at--246--3331Chr05:25693459..25693483 (25 bp)
CACGCGTGGTTTTGACCTTGTTTTG
LOC_Os05g44300
Os.27482.1.A1_at--1124--6291Chr05:25693376..25693400 (25 bp)
GATGAGGATATATAGCTTGGCCATT
LOC_Os05g44300
Os.27482.1.A1_at--936--931Chr05:25693303..25693327 (25 bp)
AGGCAATGCATATTTTTCCCTGTGG
LOC_Os05g44300
Target Sequence 
CACATGGCGCCCTGGAGGAAGCAGCGGTACATGGAGGCCAAGTGGCTCGCCACGCCGGAGCGGGTCGCGCCGCCCGGCAA
CGCCGGCGGCGCCGGCGACGCGGTGGCGGTCGGGTCGCCGTCGTCGCCGCTGTCGCCGGGGATGACGAACAGGCAGATGC
AGCCCAAGTTCAGGGCGTCCATGCTCACGCTCGACTTCGGCGGCCGGACCNCCGTGGAGGTCGTGTGAGCTAGCGATCGA
TGGGTGAGAAGTTGAGAAGATTGTTTTGATTTTGAATTTTTTGNTTTTTTTTTTGGTATGTGCACGCGTGGTTTTGACCT
TGTTTTGACTTCTGAAGAACAAGGNNCGGAGCAGCTAGGCTNTGAAATTGTGAGGATTATGTAATGATGAGGATATATAG
CTTGGCCATTTTNGTNANNATTTTATATTGAAGAAATTTAATNGGGAAAAAAGAGGAAAGGCAATGCATATTTTTCCCTG
TGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27482.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis