Browse Element(s) Details


Os.27501.1.S1_at

Description gb:AK103665.1
DB_XREF= gi:32988874
TID=Os.27501.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full insert sequence.
FL= gb:AK103665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0360011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03570OsAffx.617.1.A1_x_at10/119+1751491..1758371hypothetical protein
LOC_Os09g03570OsAffx.617.1.A1_at4/119+1751491..1758371hypothetical protein
LOC_Os09g03580NANA9+1763591..1765060hypothetical protein
LOC_Os09g03590NANA9+1768286..1772977retrotransposon protein, putative, unclassified
LOC_Os09g03600Os.27501.1.S1_at11/119+1779100..1785142expressed protein
LOC_Os09g03610Os.28261.1.S1_a_at11/119+1789446..1798556FCA protein, putative, expressed
LOC_Os09g03620Os.12669.1.S1_at11/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620OsAffx.379.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620Os.12980.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27501.1.S1_at--950--10191Chr09:1784566..1784590 (25 bp)
TATATTGACCTAGGCATGACAGCTG
LOC_Os09g03600
Os.27501.1.S1_at--583--271Chr09:1784621..1784645 (25 bp)
ATATGGTAAGCCGTGGCGTTGCCTT
LOC_Os09g03600
Os.27501.1.S1_at--376--7551Chr09:1784633..1784657 (25 bp)
GTGGCGTTGCCTTGTTGCCCAACAA
LOC_Os09g03600
Os.27501.1.S1_at--811--2611Chr09:1784656..1784680 (25 bp)
AACCCCAGGGCAGTGCTAGCATCAG
LOC_Os09g03600
Os.27501.1.S1_at--170--4871Chr09:1784670..1784694 (25 bp)
GCTAGCATCAGTTTATGTGGACCTT
LOC_Os09g03600
Os.27501.1.S1_at--48--8291Chr09:1784759..1784783 (25 bp)
GGCATAGTGTAGCAGTCAGCAGTTA
LOC_Os09g03600
Os.27501.1.S1_at--73--8111Chr09:1784789..1784813 (25 bp)
GGACCGGTCGCCCTTTTGATGATTT
LOC_Os09g03600
Os.27501.1.S1_at--906--71Chr09:1784826..1784850 (25 bp)
ATTGCCATTTCATCTTTTGGACCCT
LOC_Os09g03600
Os.27501.1.S1_at--1017--31Chr09:1785053..1785077 (25 bp)
ATTGTTCGGGAAAGCAACGTGCAAA
LOC_Os09g03600
Os.27501.1.S1_at--36--6091Chr09:1785103..1785127 (25 bp)
GAGTATGCTGTGGATCTTTTGCCGT
LOC_Os09g03600
Os.27501.1.S1_at--614--3671Chr09:1785118..1785142 (25 bp)
CTTTTGCCGTTGCTGATGCATCTCA
LOC_Os09g03600
Target Sequence 
TATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTT
GTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCA
AGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTT
GATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTC
TTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAG
GGGTGTAATGTGTCGGAGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATA
TGTGCTTATTGTTCGGGAAAGCAACGTGCAAAATCTTTTGAACCCGATGACCAAGATGAGTATGCTGTGGATCTTTTGCC
GTTGCTGATGCATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis