Browse Element(s) Details


Os.27530.1.S1_at

Description gb:AK119600.1
DB_XREF= gi:37989223
TID=Os.27530.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E04, full insert sequence.
FL= gb:AK119600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4630011/11expressed protein
LOC_Os05g238501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein
LOC_Os11g46260Os.14919.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46260Os.56216.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46270NANA11+27512604..27514961retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46280OsAffx.31083.5.S1_s_at11/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.4.S1_x_at5/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.4.S1_at3/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.1.S1_x_at1/1111+27515520..27516583hypothetical protein
LOC_Os11g46290OsAffx.29313.1.S1_at1/1111+27519490..27522219transposon protein, putative, Mutator sub-class
LOC_Os11g46300Os.27530.1.S1_at11/1111+27524262..27526145expressed protein
LOC_Os11g46806Os.46012.2.S1_x_at9/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.46012.3.S1_x_at8/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.27088.1.A1_x_at5/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.54691.1.S1_x_at1/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46810OsAffx.22442.1.S1_x_at1/1111+27531745..27533826Protein kinase domain containing protein
LOC_Os11g46820NANA11+27542728..27543234hypothetical protein
LOC_Os11g46830Os.14491.2.S1_x_at3/1111+27546942..27550639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46830Os.47463.1.S1_x_at2/1111+27546942..27550639transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27530.1.S1_at--552--8834Chr11:27525603..27525627 (25 bp)
TGATAGTTCTGTTTTGTTGCGTTTC
LOC_Os11g46300
Os.27530.1.S1_at--887--10794Chr11:27525616..27525640 (25 bp)
TTGTTGCGTTTCTTTGCTTCAGAAA
LOC_Os11g46300
Os.27530.1.S1_at--218--5555Chr11:27525637..27525661 (25 bp)
GAAACTGTGGATTTCTTGCTCTGTC
LOC_Os11g46300
Os.27530.1.S1_at--955--7935Chr11:27525645..27525669 (25 bp)
GGATTTCTTGCTCTGTCCTGCAAAA
LOC_Os11g46300
Os.27530.1.S1_at--836--5853Chr11:27525671..27525695 (25 bp)
GACCACATTTATTTTCTCCTTCAAT
LOC_Os11g46300
Os.27530.1.S1_at--117--10312Chr11:27525683..27525707 (25 bp)
TTTCTCCTTCAATCTGTAGCATCAG
LOC_Os11g46300
Os.27530.1.S1_at--640--7614Chr11:27525751..27525775 (25 bp)
GGGACATTGAGTTTTGTTAGTGCAA
LOC_Os11g46300
Os.27530.1.S1_at--129--7758Chr11:27525798..27525822 (25 bp)
GGTGTTGCAAAGTAGCCCTATCATT
LOC_Os11g46300
Os.27530.1.S1_at--362--10338Chr11:27525851..27525875 (25 bp)
TTTCTTGTTGTTTCTCTAGCGCATA
LOC_Os11g46300
Os.27530.1.S1_at--639--10818Chr11:27525899..27525923 (25 bp)
TTGTACTATCAGGTTGCTGGGCTCA
LOC_Os11g46300
Os.27530.1.S1_at--1160--591Chr11:27525929..27525953 (25 bp)
ATGCGAACTTTGATTGAGTGGCCAA
LOC_Os11g46300
Target Sequence 
TGATAGTTCTGTTTTGTTGCGTTTCTTTGCTTCAGAAACTGTGGATTTCTTGCTCTGTCCTGCAAAAGGACCACATTTAT
TTTCTCCTTCAATCTGTAGCATCAGTTGCTTGCTTGCTTGGCCAATGAAATGAGGTGGGTTGGGGATGGGGACATTGAGT
TTTGTTAGTGCAATGTATTATGGGGACATCAGATTGGTGTTGCAAAGTAGCCCTATCATTCAAAAACTAATATCGTATCT
GTAGATTGTTTCTTGTTGTTTCTCTAGCGCATAAAAAAATAATCTAACACATGGTATTGTACTATCAGGTTGCTGGGCTC
AAACATATGCGAACTTTGATTGAGTGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis