Browse Element(s) Details


Os.27538.1.S1_at

Description gb:CB678565
DB_XREF= gi:29682290
DB_XREF=OSJNEe16M02.r
CLONE=OSJNEe16M02
TID=Os.27538.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27538 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:A57072 (A.thaliana) A57072 disease resistance protein RPM1 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g174309/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17400NANA12+9971351..9971878hypothetical protein
LOC_Os12g17410NANA12+9977964..9982060NB-ARC domain containing protein
LOC_Os12g17420NANA12+9983692..9985325disease resistance protein RPM1 homolog, putative
LOC_Os12g17430Os.45902.1.A1_x_at11/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.45902.1.A1_at10/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.27538.1.S1_at9/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.10222.1.S1_x_at2/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.51841.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.727.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.56372.1.S1_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27538.1.S1_at--1155--8791Chr12:9992915..9992939 (25 bp)
TGTTGACAAAACAGGATGGATCCTC
LOC_Os12g17430
Os.27538.1.S1_at--561--5571Chr12:9992881..9992905 (25 bp)
GAAAGTGGTTTCCATTGTGGGCTTT
LOC_Os12g17430
Os.27538.1.S1_at--1106--3371NONE
CAGCTTTAGTATTTATTTCACGGAG
NONE
Os.27538.1.S1_at--1050--10031NONE
TAGTATTTATTTCACGGAGTCCTGA
NONE
Os.27538.1.S1_at--603--2311Chr12:9992685..9992709 (25 bp)
AAAGTTGTTGGGATCAAGGCAGAAA
LOC_Os12g17430
Os.27538.1.S1_at--234--1571Chr12:9992630..9992654 (25 bp)
AGCTCAGAGAATACCTAACAAGTAG
LOC_Os12g17430
Os.27538.1.S1_at--654--3711Chr12:9992616..9992640 (25 bp)
CTAACAAGTAGAAGGTGGGCACAAA
LOC_Os12g17430
Os.27538.1.S1_at--1131--7591Chr12:9992600..9992624 (25 bp)
GGGCACAAAAATAATTGGTTCTCTT
LOC_Os12g17430
Os.27538.1.S1_at--98--8571Chr12:9992585..9992609 (25 bp)
TGGTTCTCTTTCATTTACTTTCCTG
LOC_Os12g17430
Os.27538.1.S1_at--31--9531Chr12:9992581..9992605 (25 bp)
TCTCTTTCATTTACTTTCCTGTTAA
LOC_Os12g17430
Os.27538.1.S1_at--129--6471Chr12:9992487..9992511 (25 bp)
GATACAAGCCAATTCAAAACCCATG
LOC_Os12g17430
Target Sequence 
TGTTGACAAAACAGGATGGATCCTCNCAACAGNTGAAAGTGGTTTCCATTGTGGGCTTTGGGGGCCTTGGCAAGACTACT
CTTGNTAACCAAGTACTTAAAAAAATCAAGCATCAGTTTGATTGCNCAGCTTTAGTATTTATTTCACGGAGTCCTGACAN
TAAGAAGATNTTATTTGTTTTGCTTAAAGATATGATCAACAAAANCAATTCTAATGATGAGAAGCACAAAAAAGTTGTTG
GGATCAAGGCAGAAAAATCAGATGATGAGAAACAANTAATCAATAAGCTCAGAGAATACCTAACAAGTAGAAGGTGGGCA
CAAAAATAATTGGTTCTCTTTCATTTACTTTCCTGTTAAAGTNTTCATNTTAAATTTTTCAAGTNGTTTCCATNTGTTGA
GGTCCCTTTTTCCNNNGNTGTNCAATTTGATACAAGCCAATTCAAAACCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis