Browse Element(s) Details


Os.27539.1.A1_at

Description gb:AK070042.1
DB_XREF= gi:32980066
TID=Os.27539.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038I06, full insert sequence.
FL= gb:AK070042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4292011/11Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27539.1.A1_at--1064--7091Chr04:25175034..25175058 (25 bp)
GTCACTAGACATTTCAGGCTACATC
LOC_Os04g42920
Os.27539.1.A1_at--337--231Chr04:25175097..25175121 (25 bp)
ATATTTGCTTGGACTCGTGGACTAG
LOC_Os04g42920
Os.27539.1.A1_at--801--1471Chr04:25175967..25175991 (25 bp)
AGAATTCATTGACGCTGTGGCTCAG
LOC_Os04g42920
Os.27539.1.A1_at--479--4731Chr04:25175980..25176004 (25 bp)
GCTGTGGCTCAGCAACTGCGAGAAA
LOC_Os04g42920
Os.27539.1.A1_at--732--1711Chr04:25176015..25176039 (25 bp)
ACCAGCTGTGGTTTAATCCTCAATA
LOC_Os04g42920
Os.27539.1.A1_at--787--10551Chr04:25176046..25176070 (25 bp)
TTCTATGTCTGGTTGGAAGCCTATC
LOC_Os04g42920
Os.27539.1.A1_at--717--31Chr04:25176071..25176095 (25 bp)
ATTGGGTGCAGCAGGTTCACTCGCT
LOC_Os04g42920
Os.27539.1.A1_at--79--9071Chr04:25176097..25176121 (25 bp)
TGCATTCGCGCGCATTTTGATTGGG
LOC_Os04g42920
Os.27539.1.A1_at--500--2671Chr04:25176160..25176184 (25 bp)
AAGCGATTTTTGTTTCAGCCTACCA
LOC_Os04g42920
Os.27539.1.A1_at--636--7351Chr04:25176224..25176248 (25 bp)
GTGAATTGGTGATTTCGCTACTCAA
LOC_Os04g42920
Os.27539.1.A1_at--21--9911Chr04:25176242..25176266 (25 bp)
TACTCAATTCACAACCTCGCATGGT
LOC_Os04g42920
Target Sequence 
GTCACTAGACATTTCAGGCTACATCAGAAGGGACAGGAGACAAGTACNAATAGCATTGCTTCTATATTTGCTTGGACTCG
TGGACTAGAACATAGAGCAAAGCTGGATAAAAATGATAGGCTGCTGGATTTCACAAAGAAACTTGAATCTGCATGTATTG
AAACAGTTGAATCGGGGAAGATGACAAAGGATCTTGCACTCCTTATCCATGGCCCCAAGGTAACAAGGGAGTTCTACCTT
AACACCGAAGAATTCATTGACGCTGTGGCTCAGCAACTGCGAGAAAAGATTCAAATACCAGCTGTGGTTTAATCCTCAAT
ATGCAAATTCTATGTCTGGTTGGAAGCCTATCATTGGGTGCAGCAGGTTCACTCGCTGTGCATTCGCGCGCATTTTGATT
GGGGTGATGAGACGGATGATCCCATTTAATNGTTTGCCTCGAAGCGATTTTTGTTTCAGCCTACCATTTTATCATGTTAA
ACTGTTAATAATCTGCTAGTGCTAAGTGAATTGGTGATTTCGCTACTCAATTCACAACCTCGCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27539.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis