Browse Element(s) Details


Os.27551.1.S1_at

Description gb:AK100043.1
DB_XREF= gi:32985252
TID=Os.27551.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152L11, full insert sequence.
FL= gb:AK100043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4899011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48980Os.12153.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48980OsAffx.24792.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48990Os.27551.1.S1_at11/112+29944849..29950956CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein
LOC_Os02g49020NANA2+29969212..29969886hypothetical protein
LOC_Os02g49030NANA2+29971431..29972734tRNA synthetase class I family protein, putative
LOC_Os02g49040OsAffx.24793.1.S1_at11/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49040Os.35524.1.S3_at1/112+29973929..29976865Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27551.1.S1_at--46--9191Chr02:29945333..29945357 (25 bp)
TGCCGGCATTCCAACATAAAACTAA
LOC_Os02g48990
Os.27551.1.S1_at--455--9871Chr02:29945294..29945318 (25 bp)
TACATGGTTACCCTTTTCTCACTTT
LOC_Os02g48990
Os.27551.1.S1_at--932--1051Chr02:29945219..29945243 (25 bp)
AGTGGTGACCCGAGGCAAACTGAGA
LOC_Os02g48990
Os.27551.1.S1_at--1032--5311Chr02:29945170..29945194 (25 bp)
GAAGTCACTTAACATAGTCCAGCTT
LOC_Os02g48990
Os.27551.1.S1_at--1016--1371Chr02:29945118..29945142 (25 bp)
AGAGCCAATGCACAGCTTATTTATG
LOC_Os02g48990
Os.27551.1.S1_at--875--9251Chr02:29945081..29945105 (25 bp)
TCCTGATCTGCTGTATGCATCTCAT
LOC_Os02g48990
Os.27551.1.S1_at--258--651Chr02:29945067..29945091 (25 bp)
ATGCATCTCATCAATGCCTTGTGCA
LOC_Os02g48990
Os.27551.1.S1_at--185--4451Chr02:29945052..29945076 (25 bp)
GCCTTGTGCATTTTTCATTTTCAGA
LOC_Os02g48990
Os.27551.1.S1_at--106--7571Chr02:29945012..29945036 (25 bp)
GGGCCGGAATTCATAGTTCTTCATA
LOC_Os02g48990
Os.27551.1.S1_at--861--9071Chr02:29944942..29944966 (25 bp)
TGCTTTGCCTCCCTTCAAATGTAAA
LOC_Os02g48990
Os.27551.1.S1_at--1114--231Chr02:29944911..29944935 (25 bp)
ATATATGACTGCACTGCTTGCTGCT
LOC_Os02g48990
Target Sequence 
TGCCGGCATTCCAACATAAAACTAAACTTCATTGCTTTGTACATGGTTACCCTTTTCTCACTTTTTTTTTGGTCTATCAA
AAAACCGAGCAAATCTTACTNTGAATAAGTACAGAGTGGTGACCCGAGGCAAACTGAGAAGATAGTCAAGAAAGACCGTG
CTGGAAGTCACTTAACATAGTCCAGCTTNATAATAGTCCAAAAGGGATATTNCTAAAAGAGCCAATGCACAGCTTATTTA
TGTTCCATCNGAGCCNTCCTGATCTGCTGTATGCATCTCATCAATGCCTTGTGCATTTTTCATTTTCAGAACAGTTTGAG
GCAATGGGCCGGAATTCATAGTTCTTCATACCCTTTTTTTGGTTGATATGGTCAATACATGATCAGGTTTTTCATTGCTT
TGCCTCCCTTCAAATGTAAAGTGTAAATATATGACTGCACTGCTTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis