Browse Element(s) Details


Os.27569.1.S1_a_at

Description gb:AK062351.1
DB_XREF= gi:32972369
TID=Os.27569.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G05, full insert sequence.
FL= gb:AK063923.1 gb:AK121706.1 gb:AK062351.1 gb:AK121809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g016209/11expressed protein
LOC_Os11g037609/11expressed protein
LOC_Os05g134207/11expressed protein
LOC_Os05g134406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein
LOC_Os12g01600NANA12+363239..364726retrotransposon protein, putative, unclassified
LOC_Os12g01610NANA12+365357..365983retrotransposon protein, putative, unclassified
LOC_Os12g01620Os.6358.1.S1_at11/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_a_at9/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_x_at5/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.4.S1_x_at4/1112+373636..378324expressed protein
LOC_Os12g01620OsAffx.28618.1.S1_at1/1112+373636..378324expressed protein
LOC_Os12g01630OsAffx.7455.1.S1_at11/1112+379395..379742hypothetical protein
LOC_Os12g01640Os.47463.1.S1_x_at6/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01640Os.14491.2.S1_x_at4/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01650NANA12+389873..393204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27569.1.S1_a_at--400--7075Chr12:18325745..18325769 (25 bp)
GTAAGGGCTAGGTTGGGCATCTCCT
NONE
Os.27569.1.S1_a_at--4--2893Chr12:18325747..18325771 (25 bp)
AAGGGCTAGGTTGGGCATCTCCTTC
NONE
Os.27569.1.S1_a_at--297--4936Chr12:18325884..18325908 (25 bp)
GCTTGCTTTTTTGTTCTAAGATGGC
NONE
Os.27569.1.S1_a_at--244--10716Chr12:18325886..18325910 (25 bp)
TTGCTTTTTTGTTCTAAGATGGCCA
NONE
Os.27569.1.S1_a_at--526--4896Chr12:18325888..18325912 (25 bp)
GCTTTTTTGTTCTAAGATGGCCAAT
NONE
Os.27569.1.S1_a_at--488--10375Chr12:18325890..18325914 (25 bp)
TTTTTTGTTCTAAGATGGCCAATGA
NONE
Os.27569.1.S1_a_at--677--3734Chr12:18325899..18325923 (25 bp)
CTAAGATGGCCAATGATGACTAATG
NONE
Os.27569.1.S1_a_at--312--6234Chr12:18325903..18325927 (25 bp)
GATGGCCAATGATGACTAATGTTGC
NONE
Os.27569.1.S1_a_at--407--8454Chr12:18325906..18325930 (25 bp)
GGCCAATGATGACTAATGTTGCTGA
NONE
Os.27569.1.S1_a_at--936--6335Chr12:18325936..18325960 (25 bp)
GATGCTTATGAACAGATTTTTCCTA
NONE
Os.27569.1.S1_a_at--437--4875Chr12:18325939..18325963 (25 bp)
GCTTATGAACAGATTTTTCCTACAC
NONE
Target Sequence 
GTAAGGGCTAGGTTGGGCATCTCCTTCCTTTTCTCACCTCCTCCAGTTTTCTTCTCCTCTCTTCCTTTGATTTCAGCCGA
TTTGTTTGGATTAGACCGTGTCCCCTTCATAAATATGCTAGATCTACTAAAAGCTGATATCTTTCTTAGTTGATTTCGAT
GGAATGAAATGTCTAGTGGCTTGCTTTTTTGTTCTAAGATGGCCAATGATGACTAATGTTGCTGATTTGTGATGCTTATG
AACAGATTTTTCCTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27569.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis