Browse Element(s) Details


Os.27592.2.S1_at

Description gb:CB621139
DB_XREF= gi:29616127
DB_XREF=OSIIEa06N03.f
CLONE=OSIIEa06N03
TID=Os.27592.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27592 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177036.1 (A.thaliana) protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4249011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42459NANA11+25066871..25067641NA
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27592.2.S1_at--826--8451Chr11:25088899..25088923 (25 bp)
TGGCCCTTGCGGTGAAGCTCGCCGC
LOC_Os11g42490
Os.27592.2.S1_at--806--4331Chr11:25089073..25089097 (25 bp)
CCATGGAGCTCCTCGCGACGAAGGA
LOC_Os11g42490
Os.27592.2.S1_at--375--471Chr11:25089114..25089138 (25 bp)
ATCTCCGCCAATCTCGCTGAATCGG
LOC_Os11g42490
Os.27592.2.S1_at--982--4371Chr11:25089152..25089176 (25 bp)
CCAACTGGAGGAGCAGAACTCGCAG
LOC_Os11g42490
Os.27592.2.S1_at--915--1431Chr11:25089166..25089190 (25 bp)
AGAACTCGCAGCTCCGTGCAGAGAG
LOC_Os11g42490
Os.27592.2.S1_at--218--4531Chr11:25089235..25089259 (25 bp)
GCCGCGTTCACACTCAGAAGACGGA
LOC_Os11g42490
Os.27592.2.S1_at--346--6751Chr11:25089240..25089264 (25 bp)
GTTCACACTCAGAAGACGGAGGTGG
LOC_Os11g42490
Os.27592.2.S1_at--324--5371Chr11:25089287..25089311 (25 bp)
GAAGAACACCGAGAAGCACAAGCAG
LOC_Os11g42490
Os.27592.2.S1_at--383--8471Chr11:25089340..25089364 (25 bp)
TGGCGGAACTGAAGCTTTTGACCTC
LOC_Os11g42490
Os.27592.2.S1_at--365--5471Chr11:25089345..25089369 (25 bp)
GAACTGAAGCTTTTGACCTCCATTA
LOC_Os11g42490
Os.27592.2.S1_at--988--1551Chr11:25089352..25089376 (25 bp)
AGCTTTTGACCTCCATTAAGACAGA
LOC_Os11g42490
Target Sequence 
TGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCNGCGGCGACGCGCGCGCGCCTCGACNCCGCGCGAGAGTCG
CTCNAGGCCGCGGAGGCTGCNGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGC
GGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGG
ACGCCATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAG
ACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGA
GAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27592.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis